Pairwise Alignments

Query, 456 a.a., type I secretion outer membrane protein, TolC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 451 a.a., transporter from Escherichia coli ECRC102

 Score =  106 bits (264), Expect = 2e-27
 Identities = 89/419 (21%), Positives = 181/419 (43%), Gaps = 15/419 (3%)

Query: 34  AETKLKDSVLSTINSNPKLKVFQENREAATHDLRRARAGWLPRVDVRAGYGAEQYSDTTS 93
           A+  L++S+L     NP +             +  A++ W P V +    G  + +D++ 
Sbjct: 45  AQLSLQESILRAFARNPGVTQQAAQIGIGEAQIDEAKSAWYPHVGLTGNAGPSRQTDSSG 104

Query: 94  RQSNKDDEFTERGDASAVLTQTVWDGFATSSRVDVGKAKLDSADNRLMDNAEALGLDAVL 153
           R  N              LTQ V+D   T++ +++  A  DS   +LM     +      
Sbjct: 105 RLDNNVSY-------GITLTQLVYDFGKTNNDINLQTAARDSYRFKLMATLTDVAEKTAT 157

Query: 154 AHIEVLRQREIVRLSEINVQQHQTILGSQSERQKMGVASIADVTQTQGRLARAQSTLVES 213
           A++EV R + +   ++ N+   + +    + R   G+ S +D  Q Q R+A  +STL + 
Sbjct: 158 AYMEVSRYQALCDAAQRNIHSLENVYNMAALRANAGLNSSSDELQAQTRIAGMRSTLEQY 217

Query: 214 RSALEVAEAAYKRLTGMEVPTELERAGIPDTAPASFETAL-GASLTANPKIAAYQSDIQA 272
           ++ +  A+A    LTG++     E    P    A    +L      + P + A ++  Q+
Sbjct: 218 QAQMASAKAQLAVLTGVQP----EAIAAPPAELAEQPVSLKNIDYQSIPLVLAAENLRQS 273

Query: 273 ARGQEDLDKSRFHPNVYLEVGPSYKERVESSESYAWGTTAMMRVNWNIYDGGADVAAVRG 332
           A+   +  K+++ P + ++ G   K R ++S+   W     + VN  +Y GGA  A V+ 
Sbjct: 274 AQYGVEKTKAQYWPTLSIQGG---KTRYQTSDRSYWDDQLQLNVNAPLYQGGAVSAQVQQ 330

Query: 333 SAARVRQSRQELQNLLDTLNEETRATWSRYLSAHEQSSFYTTAVTYNTQTRDTYMQQFLV 392
           +  + + S  +++     + +     ++ +  A  +            +TRD Y  ++ +
Sbjct: 331 AEGQQKISASQVEQAKLDVLQRASVAYANWTGARGREEAGLAQSESAHKTRDVYQNEYKL 390

Query: 393 GQRSLLDVLDAENELYSSEVQLVTAKANEAGTAYRLLALGGNLLASLSIDRSELRNVPE 451
           G+RSL D+L  E +++ ++   + A  +    A    A   NL+    I +    ++P+
Sbjct: 391 GKRSLNDLLTVEQDVFQAQSAEINANYDGWVAAVNYAAAVNNLIPLAGIKQGLYNDLPD 449



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 28/213 (13%)

Query: 232 VPTELERAGIPDTAPASFETALGASLTANPKIAAYQSDIQAARGQEDLDKSRFHPNVYL- 290
           +P       +   A  S + ++  +   NP +    + I     Q D  KS ++P+V L 
Sbjct: 32  LPQWANAPAVTPVAQLSLQESILRAFARNPGVTQQAAQIGIGEAQIDEAKSAWYPHVGLT 91

Query: 291 -EVGPSYKE----RVESSESYAWGTTAMMRVNWNIYDGGADVAAVRGSAARVRQSRQELQ 345
              GPS +     R++++ SY    T +      +YD G     +    A     R +L 
Sbjct: 92  GNAGPSRQTDSSGRLDNNVSYGITLTQL------VYDFGKTNNDINLQTAARDSYRFKLM 145

Query: 346 NLLDTLNEETRATW---SRY--------LSAHEQSSFYTTAVT-----YNTQTRDTYMQQ 389
             L  + E+T   +   SRY         + H   + Y  A        N+ + +   Q 
Sbjct: 146 ATLTDVAEKTATAYMEVSRYQALCDAAQRNIHSLENVYNMAALRANAGLNSSSDELQAQT 205

Query: 390 FLVGQRSLLDVLDAENELYSSEVQLVTAKANEA 422
            + G RS L+   A+     +++ ++T    EA
Sbjct: 206 RIAGMRSTLEQYQAQMASAKAQLAVLTGVQPEA 238