Pairwise Alignments

Query, 301 a.a., membrane protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 289 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  144 bits (363), Expect = 2e-39
 Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 10  YLCALAATVIWSGNFIVARALADTVPPVTTSFLRWVTALVVILPFGLGAVRRDMPLLRAN 69
           Y   L A  IW+GN +V +     + P    F RW+ A ++  PF +  V  +  L+R N
Sbjct: 3   YAYPLLAIFIWAGNTVVNKLAVGALFPAEIGFYRWLLAALLFTPFMIKPVIANWALIRPN 62

Query: 70  LTYFIMAGITGVSVFNTFIYIAGRTTEAINMALIASSSPVWIIILSRILLGEAVTLRRAA 129
           L    + G+ G++V+ +  Y A   T A NM +I S  P+  +  + I LG+ +T     
Sbjct: 63  LGKVFILGVLGMAVYQSLAYYAASLTTATNMGIILSLMPLMALTAAIISLGQRLTYGALT 122

Query: 130 GVAVSLCGTLVLVTRGDFTRLASLRFAVGDLWMLAAALTFASYSVLLRKKPEGISALGSL 189
           G  +S  G +V+V+ G    L      +GD  ML A L +A YS LL+K    +  L  L
Sbjct: 123 GAVLSFAGVVVVVSAGSLDALLQHGVNLGDGMMLVATLAYAVYSTLLKKWQLRLPPLVLL 182

Query: 190 TTTFAIGVVGILPMLAWEWGHGAQLAVTPAVVGAVLYIGIGASLLAYLCWSVAVERIGPA 249
                + VV + P+  +     A+  +  A +  VLY  + AS+LA L W  +V+ +GP+
Sbjct: 183 YLQVLVAVVVLFPLFLF----SAKAGLGWANIPLVLYACLLASMLAPLAWMHSVKTLGPS 238

Query: 250 KSALVYYSLPLFSATEAALLLGETITLAHVASCALIVGGILIATMQRAP 298
           ++ L +  LPL +A  AA++L E + L H+    L +GG++++     P
Sbjct: 239 RTTLFFNLLPLITALIAAVVLKEELALYHLVGGLLTLGGVILSERWTTP 287