Pairwise Alignments

Query, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 2e-38
 Identities = 126/447 (28%), Positives = 189/447 (42%), Gaps = 33/447 (7%)

Query: 12  VTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTADECD 71
           +T++ LA  G+ +   EGR  FV+  L G+++  R+     +  EA    V + +     
Sbjct: 29  LTIERLANDGRGIVFFEGRTWFVNGALAGEEVEARVLGTHGKIVEARTERVFSASELRRP 88

Query: 72  PFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNK 131
             C HFG CGGC+ Q+LP+  QLA K+R + + L R+  +E       L S  + G+R +
Sbjct: 89  APCAHFGRCGGCSVQHLPHGEQLALKQRMLAEQLSRVAGVEPQEWAAPL-SGAEFGYRRR 147

Query: 132 MEFAFTTDDR-EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDD 190
              A   D R + L +G R     ++V +  C +       ++    ++ R    P    
Sbjct: 148 ARVAVRWDARAKQLEVGFRAVASQDIVAIDECPVLVQALQPIMQRLPNMLRRLSKP--QA 205

Query: 191 AAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRS 250
             H   +    V    R          AP  EA+      F A  +A   + G       
Sbjct: 206 LGHVELFSGTSVAVLLRH--------IAPLSEADLQVLKEFCAFHEAQLWLHG-----EG 252

Query: 251 QNSQVAYGDATVFTEGEIVLTEKLGA--IELDFGHDTFLQTNTRATELLYGEVERMAGLS 308
           Q   V         E + VL  +L    +EL +    F+Q N    E +  +        
Sbjct: 253 QPEPV---------EADSVLGFRLSHWDLELAYRPGDFVQVNAGVNEAMVAQALEWLAPQ 303

Query: 309 GREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRA 368
             E V DL+CG+G+ AL LA     +  +E     VE A  NA +    +  F   D+  
Sbjct: 304 PDERVLDLFCGLGNFALPLARQVREVVAVEGVQTMVERAAVNAVSNDLHNVQFFQADLSQ 363

Query: 369 LLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARD-VGL 427
            L      K        V+ DPPR G   +V+  L      R+VYVSC+PAT+ARD V L
Sbjct: 364 PLTDAEWAKQGF---SAVLLDPPRDGA-LEVVRKLATLGAKRLVYVSCNPATLARDTVEL 419

Query: 428 LMQRYTLHEARPVDLFPHTPHVETVVL 454
           + Q Y L  A  +D+FP T HVE + L
Sbjct: 420 VKQGYRLKRAGILDMFPQTAHVEAMAL 446