Pairwise Alignments

Query, 394 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 373 a.a., RNA ligase RtcB family protein from Pectobacterium carotovorum WPP14

 Score =  135 bits (340), Expect = 2e-36
 Identities = 113/378 (29%), Positives = 176/378 (46%), Gaps = 59/378 (15%)

Query: 43  IDDKAWEQIENVLSLDCLVRLAIMPDVHAGYDLCIGGVALLAGTISPGFVGYDIGCGMCH 102
           I+DKA +Q++    L  +VR+A MPD+H G    IG          P  VG DIGCGM  
Sbjct: 22  IEDKAIQQLQITSQLPDMVRVAGMPDLHPGRGYPIGAAFFSQQRFYPALVGNDIGCGMAL 81

Query: 103 VNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLSASGDKGLTASVVA 162
           + T    +++  D L ++                   G  D P       D  +  S +A
Sbjct: 82  LRTSLNANKISLDKLEKRL------------------GNIDGP----LEDDIDIPPS-LA 118

Query: 163 KAARQMATLGGGNHFIEVGVNSR--------------SEVGITLHSGSRRPGWDIAAWYM 208
                + T+GGGNHF E+                    ++ + +HSGSR  G  I   ++
Sbjct: 119 DFRYSLGTIGGGNHFAELQQLDEIYQPDALHALHIDPKQLLLLVHSGSRGLGQTILEAHV 178

Query: 209 RQ--GRLFALRTPMGQAYLKDMQWAQEYALANRRAMLALVLKAFPSLDEATISHLLASTI 266
           R+   +     TP  +AYL+  Q+A  +A  NRR +   +L+ + +  +A         +
Sbjct: 179 REFGHQGLEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGDA--------AL 230

Query: 267 NENHN---HAEVDG-ANVLHRKGATPAASGQPGIIPANQRDGVYITRGLGNAYYLSSASH 322
           + NHN    A ++G +  LHRKGATPA  G P IIP ++ D  YI + + +A  L S +H
Sbjct: 231 DVNHNLVTPATIEGISGWLHRKGATPADCG-PVIIPGSRGDYSYIVQPIPHADSLYSLAH 289

Query: 323 GAGR------VMSRQKARAHIEQMTFERQMHGILCRTDKGVLDEAPDAYKPIAPVLAA-Q 375
           GAGR         R  +R  ++Q+   R    ++C+  + +  EAP+AYKPI  V+ A Q
Sbjct: 290 GAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVICQDRQLIFQEAPEAYKPIDSVIGAMQ 349

Query: 376 DGLLVDVVDHFRPVVVIK 393
              L+ ++   +PV+  K
Sbjct: 350 QAGLITLIARLKPVLTYK 367