Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 374 a.a., tRNA 2-thiouridylase from Pseudomonas simiae WCS417

 Score =  199 bits (506), Expect = 9e-56
 Identities = 140/358 (39%), Positives = 187/358 (52%), Gaps = 26/358 (7%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-------TGHDPVPDIRAMCDRLGV 55
           + V MSGG DS  + VLL EQG +V GL  +           T  D + D +A+CD++G+
Sbjct: 14  VIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTEYCTAMDDLADAQAVCDKIGI 73

Query: 56  DLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVHLATGH 115
            LH  +    + ++V   F+ +Y  GRTPNP   CN  +KF    D A  +GA  +ATGH
Sbjct: 74  KLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAMMLGADLIATGH 133

Query: 116 YARLLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARRSI 175
           Y R  R     T L +G+DP KDQSYFL  V   ++ K +FP+G   K  VR    +  +
Sbjct: 134 YVR-RRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPEVRRIAEKHGL 192

Query: 176 VPPLPSESQEICFVPDDDYRAFLKDRRVRLPG-PGPIVTTRGRKIGSHAGLWQYTEGQRK 234
                 +S  ICF+ +  +  FLK     LP  PG I TT G  IG H GL  +T GQR+
Sbjct: 193 ATAKKKDSTGICFIGERRFSDFLKQ---YLPAQPGEIKTTEGEVIGRHHGLMYHTIGQRQ 249

Query: 235 GLGI-----AWHEPLYVVGKDMENNMLLVG-GRE--ALASPGCVAEEVNLLVPYE-DWPA 285
           GLGI     A  EP YV+ KD+E+N L+VG G E   L S   +A E+  + P +   P 
Sbjct: 250 GLGIGGLKDAGEEPWYVLIKDLEHNELIVGQGNEHPLLFSGALLASEIYWVNPIDLSTPR 309

Query: 286 EVAVRIRYRQ--QPLSARVTLRDGRLYARFREPQPPAARGQVLAVYDMEHHVLGGGVI 341
            +  ++RYRQ  QP +   T    R  A F +PQ     GQ +  YD E   LGGGVI
Sbjct: 310 RLTAKVRYRQSDQPCTLEKTATGYR--AIFDDPQRAVTPGQSVVFYDGE-ICLGGGVI 364