Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 368 a.a., tRNA 2-thiouridine(34) synthase MnmA from Pectobacterium carotovorum WPP14

 Score =  189 bits (479), Expect = 1e-52
 Identities = 136/360 (37%), Positives = 193/360 (53%), Gaps = 27/360 (7%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-------TGHDPVPDIRAMCDRLGV 55
           + V MSGG DS  +  LL++QG  V GL  +           +    + D +A+CD+LG+
Sbjct: 9   VIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEYCSAATDLADAQAVCDKLGI 68

Query: 56  DLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKF-GLLADAAAHVGAVHLATG 114
           +LH V+    + ++V   F+E+Y  GRTPNP   CN  +KF   L  AA  +GA ++ATG
Sbjct: 69  ELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATG 128

Query: 115 HYARLLRHPRWG-TVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARR 173
           HY R  RH   G + L RG+D  KDQSYFL  + H ++ +++FP+G   K  VR      
Sbjct: 129 HYVR--RHDVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEEL 186

Query: 174 SIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRK-IGSHAGLWQYTEGQ 232
            +      +S  ICF+ +  +  FL   R     PGPI++    K +G H GL  +T GQ
Sbjct: 187 ELATAKKKDSTGICFIGERKFTDFL--ARYLPAQPGPILSVDDNKPMGQHQGLMYHTLGQ 244

Query: 233 RKGLGI-----AWHEPLYVVGKDMENNMLLVG-GRE--ALASPGCVAEEVNLLVPYEDWP 284
           RKGLGI        +P YVV KD+ NN+L V  G E   L S G +A++++  V  +   
Sbjct: 245 RKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQQLH-WVDRQPLT 303

Query: 285 AEV--AVRIRYRQQPLSARVT-LRDGRLYARFREPQPPAARGQVLAVYDMEHHVLGGGVI 341
           AE+   V+ RYRQ  +   VT L D R+  RF EP      GQ  AV+ ++   LGGG+I
Sbjct: 304 AELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQ-SAVFYLDDVCLGGGII 362