Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 367 a.a., tRNA 2-thiouridine(34) synthase MnmA from Serratia liquefaciens MT49

 Score =  201 bits (512), Expect = 2e-56
 Identities = 138/358 (38%), Positives = 194/358 (54%), Gaps = 24/358 (6%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPPTGHDP-------VPDIRAMCDRLGV 55
           + V MSGG DS     LL++QG QV GL  +       +        + D +A+CD+LG+
Sbjct: 9   VIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEYCSAATDLADAQAVCDKLGI 68

Query: 56  DLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKF-GLLADAAAHVGAVHLATG 114
           +LH V+    + ++V   F+E+Y  GRTPNP   CN  +KF   L  AA  +GA  +ATG
Sbjct: 69  ELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADFIATG 128

Query: 115 HYARLLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARRS 174
           HY R  +     + L RGVD  KDQSYFL  + H ++ +++FP+G   K  VR    +  
Sbjct: 129 HYVR-RQDVDGKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEVRRIAQQLD 187

Query: 175 IVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLWQYTEGQRK 234
           +V     +S  ICF+ +  +R FL   R     PGPIV+  G+ +G H GL  +T GQRK
Sbjct: 188 LVTAKKKDSTGICFIGERKFRDFL--GRYLPAQPGPIVSVDGQTVGEHQGLMYHTLGQRK 245

Query: 235 GLGI-----AWHEPLYVVGKDMENNMLLVG-GRE--ALASPGCVAEEVNLL--VPYEDWP 284
           GLGI     +  +P YVV KD+ NN+L+V  G E   L S G VA++++ +  +P    P
Sbjct: 246 GLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHEHPRLMSVGLVAQQLHWVDRLPLSG-P 304

Query: 285 AEVAVRIRYRQQPLSARVT-LRDGRLYARFREPQPPAARGQVLAVYDMEHHVLGGGVI 341
               V+ RYRQQ +   VT L   R+  RF EP      GQ  AV+  +   LGGG+I
Sbjct: 305 FRCTVKTRYRQQDIPCTVTPLDQERIEVRFDEPVAAVTPGQ-SAVFYQDEICLGGGII 361