Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 368 a.a., tRNA(Gln,Lys,Glu) U34 2-thiouridylase from Escherichia coli BL21

 Score =  193 bits (490), Expect = 7e-54
 Identities = 138/363 (38%), Positives = 191/363 (52%), Gaps = 24/363 (6%)

Query: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-------TGHDPVPDIRAMCDRLGV 55
           + V MSGG DS  +  LL++QG QV GL  +           T    + D +A+CD+LG+
Sbjct: 8   VIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGI 67

Query: 56  DLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKF-GLLADAAAHVGAVHLATG 114
           +LH V+    + ++V   F+ +Y  GRTPNP   CN  +KF   L  AA  +GA ++ATG
Sbjct: 68  ELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATG 127

Query: 115 HYARLLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELARRS 174
           HY R         +L RG+D  KDQSYFL  + H ++ +++FP+G   K  VR       
Sbjct: 128 HYVRRADVDGKSRLL-RGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLG 186

Query: 175 IVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLWQYTEGQRK 234
           +V     +S  ICF+ +  +R FL   R     PG I+T  G +IG H GL  +T GQRK
Sbjct: 187 LVTAKKKDSTGICFIGERKFREFL--GRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRK 244

Query: 235 GLGI-----AWHEPLYVVGKDMENNMLLVG-GRE--ALASPGCVAEEVNLLVPYEDWPAE 286
           GLGI        EP YVV KD+ENN+L+V  G E   L S G +A++++  V  E +   
Sbjct: 245 GLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLH-WVDREPFTGT 303

Query: 287 V--AVRIRYRQQPLSARV-TLRDGRLYARFREPQPPAARGQVLAVYDMEHHVLGGGVILG 343
           +   V+ RYRQ  +   V  L D R+   F EP      GQ    Y+ E   LGGG+I  
Sbjct: 304 MRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGE-VCLGGGIIEQ 362

Query: 344 PLP 346
            LP
Sbjct: 363 RLP 365