Pairwise Alignments

Query, 346 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 380 a.a., tRNA-specific 2-thiouridylase MnmA from Agrobacterium fabrum C58

 Score =  176 bits (446), Expect = 9e-49
 Identities = 117/357 (32%), Positives = 163/357 (45%), Gaps = 22/357 (6%)

Query: 7   MSGGTDSLFALVLLKEQGQQVCGL------HARFIPPTGH----DPVPDIRAMCDRLGVD 56
           MSGG DS     +LK +G  V G+      H   +   G       + D R +C+ LG+ 
Sbjct: 1   MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60

Query: 57  LHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVHLATGHY 116
            +V+D    F E V+ PF E Y +G TP PC  CN T+KF  L   A  +GA  LATGHY
Sbjct: 61  HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120

Query: 117 ARLLRHPRWGT----VLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRGELAR 172
            R   +P  G      L R +D  +DQS+FL      +++   FPLG   K   R     
Sbjct: 121 IRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAEE 180

Query: 173 RSIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLWQYTEGQ 232
             +V    ++SQ+ICFVP   Y   +   +      G IV   GR +G H G+  YT GQ
Sbjct: 181 MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVHYTIGQ 240

Query: 233 RKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVN-----LLVPYEDWPAEV 287
           R+G+G+A  EPLYVV  D     ++VG REAL +      ++N      L          
Sbjct: 241 RRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADAGQGFTC 300

Query: 288 AVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVYDM---EHHVLGGGVI 341
             ++R  + P  A +   +  +Y      +   A GQ   +Y     +  V GGG I
Sbjct: 301 FAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGGGFI 357