Pairwise Alignments

Query, 702 a.a., excinuclease ABC, C subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 612 a.a., Excinuclease ABC subunit C from Kangiella aquimarina DSM 16071

 Score =  311 bits (798), Expect = 5e-89
 Identities = 211/682 (30%), Positives = 336/682 (49%), Gaps = 80/682 (11%)

Query: 5   VEPLTPSPAPMERPDLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTP 64
           V+  T S  P  +  L+ +   PGVY    + G  +YVGKA+ L  RV SYF      +P
Sbjct: 4   VDDNTSSIKPQIKKILAHLSKKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFVKQHQ-SP 62

Query: 65  KTVAMLRHAVTIDTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYP 124
           KT  ++ +   I T  T TE EALLLE +LIKK++PR+N++ RDDK Y    + A   +P
Sbjct: 63  KTELLVTYIEDIHTTVTETETEALLLENNLIKKYKPRFNVLFRDDKSYPFVFLSAGD-FP 121

Query: 125 RLEIVRKARRDDGRYFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQ 184
           RL   R A+++ G YFGPF S SA R++   I + F +R+C D  F NR R CL + + +
Sbjct: 122 RLAYHRGAKKEKGDYFGPFPSTSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKR 181

Query: 185 CLGPCVNEVPSETYAALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIR 244
           C  PCV  +  E YA  +E V L   G+S +++  L+ +M+ ASQ L+FE AA  RD+I+
Sbjct: 182 CTAPCVGYISKEEYAKDVENVKLFYQGKSEQVIKRLQKKMDVASQNLEFEIAARYRDQIK 241

Query: 245 ALERTVERQAAVLPGGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAP 304
            + R V +Q+ +     D+DV+GV        + ++F+RQG+++  +++F      ++  
Sbjct: 242 QM-RHVMQQSVISGNASDMDVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQ 300

Query: 305 ELLWSFLGQFYGPQATIPPRIVVPWLPDEDGETGDALDGSSDAVVPVAAATTIDASLADV 364
           E++ +FLG +Y   A IP ++V+  LP++       L+   +A                 
Sbjct: 301 EIVSTFLGFYYLSGAEIPKQVVIENLPED-------LEALQEAF--------------SQ 339

Query: 365 RTGTEVTSLINASHAAPNVGESTQGDTLAGATGKGATHLMLETALAALRGGIVRIALPRN 424
           + G++VT L  AS      G+  +  T A    + +    L +               ++
Sbjct: 340 QRGSKVT-LRQASR-----GQVKEWQTFANKNAEHSLRAKLNS---------------KS 378

Query: 425 PAENRLVDMAMSNAREEARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTGGRNTRVGM 484
               RL+D+  S                     L +   P  +E  D+SHT G+ T    
Sbjct: 379 NFTQRLLDLQKS---------------------LQMEQMPKHVECFDISHTQGKQTVASC 417

Query: 485 VVFEDGKPFPEAYRTYAFED-GDGDDYGTLAAWAGRRV----ESGPPWPDLLLVDGGRGQ 539
           VVF++  P    YR +       GDDY  +     RR     +   P PDL++VDGG+GQ
Sbjct: 418 VVFDENGPKKADYRIFNISGITGGDDYAAMQQALTRRYKRLRDEQQPLPDLVIVDGGKGQ 477

Query: 540 LAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRAGNVSDRIFLPGRANPLPLRAGAPE 599
           LA     F E  + + + +  ++K       +DR+ G   ++I+ PG+  PL L   +  
Sbjct: 478 LAKAEEVFNELELKSIYLI-GVSKG------SDRKVG--MEQIWFPGQHQPLLLEDDSKA 528

Query: 600 LLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVEGIGPATARALWERFDSLQAMADAG 659
           L F+QH+RD  H ++I KHR  R  +A    L+ + G+G    +AL   F   Q +  A 
Sbjct: 529 LHFIQHIRDEAHRFAITKHRHQRKKSATKSMLEEIPGVGAKRRQALLRHFGGWQEVEGAS 588

Query: 660 VEGLAAVPGVGRARAAALHAHL 681
           V+ +A  PG+  + A  ++ +L
Sbjct: 589 VKEIAGAPGISLSLAQKIYDYL 610