Pairwise Alignments

Query, 665 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 796 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

 Score =  133 bits (335), Expect = 3e-35
 Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 42/379 (11%)

Query: 302 VFDEVPAGICLMDITGRVLHLNRAMADVVGASETELVGTDCFAMLHPADRAAARALFMHD 361
           +FD+ P GI L+D+ G V   N A+  ++G    +++G     ++   +R AA       
Sbjct: 300 LFDDAPVGIALVDLDGAVGACNLALQAMLGIDRDDMIGRPVIDVVAEENRPAASEQLGKV 359

Query: 362 LENAGSPEGFHELKEYRFLRKDGTARECQVASAMLRDGDGPILGMAV-VTDVTEMRRIKA 420
           +  AGS  G H   E R   +     +  V+ +     DG I G+ +   D TE R ++ 
Sbjct: 360 I--AGSTPGTH--LEVRLKGRRNLIAQLFVSPS---HEDGDISGLVIHFIDATEQRNLEM 412

Query: 421 EAARMGQLATIGELAAGVAHEINSPANAIINCADLLME--DAFDSAMVRDMARRIRSEGQ 478
           + A+  ++  +G+LA GVAH+ N+   A+I   DLL++   A D +    M  +++    
Sbjct: 413 QFAQSQKMQAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGAGDPSFADIM--QVKQNAN 470

Query: 479 RVAAITHNLLAFARERKPPP-----PPALVDVKVVLR----DTLELTAAQMRAEGILLEV 529
           R A++   LLAF+R +   P       AL ++  +LR    +T+EL     RA G+   V
Sbjct: 471 RAASLVRQLLAFSRRQALQPRLLNVTDALAELSNLLRRLLGETIELRMIHGRALGL---V 527

Query: 530 SCSSGALHVLGRTRELQQVFLNIVSNARHALNAIPGSAARCLSINA----EPRAAGSCV- 584
               G         +  QV +N+  NAR   +A+PG  A  +  NA    +P   G  + 
Sbjct: 528 RVDPG---------QFDQVIINLAVNAR---DAMPGGGALTIRTNAVHVDQPIQRGPELM 575

Query: 585 -SGPVVSVSFRDTGGGIDPSIRDRVMEPFFTTKGEGRGTGLGLSISNAIIEDHGGVLCIE 643
            +G  V +   DTG GI      R+ EPFF+TK  G GTGLGLS    I+    G + +E
Sbjct: 576 PAGDYVQIEVADTGTGIGKENLARIFEPFFSTKEVGAGTGLGLSTVYGIVRQTDGFIFVE 635

Query: 644 SDGETGTCVTVELPQMVED 662
           S+   G   ++ LP++  D
Sbjct: 636 SEPGQGATFSIYLPRIDAD 654



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 45  MSDIVHALPVLAFCCDTDGRVVTANSRFA 73
           +SD V  LPV  +  D DG V   N R A
Sbjct: 185 LSDFVDLLPVGCYSADADGTVRYVNQRLA 213