Pairwise Alignments

Query, 665 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1079 a.a., PAS domain S-box protein from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  137 bits (344), Expect = 3e-36
 Identities = 126/448 (28%), Positives = 186/448 (41%), Gaps = 54/448 (12%)

Query: 240 FVRPIPARDHGATVVGEVAVYSLDVTLPRRAEADLRAAARLHAALAEASSRQFDRQSALL 299
           F RP   R  G  VVG V V + DVT  R A+A L           E S  +F       
Sbjct: 515 FSRP---RLAGQEVVGFVGV-AFDVTDMRTAQARL-----------EESENRFRT----- 554

Query: 300 DRVFDEVPAGICLMDITGRVLHLNRAMADVVGASETELVGTDCFAMLHPADRAAARALFM 359
             V D  PA I + D   +++  NR      G      +      ++HP D     A FM
Sbjct: 555 --VADSAPALIWMSDDAAQMVFANRRYRTFFGVEADAHLPDSWRRLIHPDDEGVFAAAFM 612

Query: 360 HDLENAGSPEGF----HELKEYRFLRKDGTAR------------EC-QVASAMLRDGD-- 400
              E     E      H     R+LR +G  R             C  V  A   + D  
Sbjct: 613 RAFEARDRFEALTRINHPTLGPRWLRTEGVPRFDASGLFQGYVGACLDVTDAKRAEDDLK 672

Query: 401 --GPILGMAVVTDVTEMRRIKAEAARMGQLATIGELAAGVAHEINSPANAIINCADLLME 458
               +L   V   + E  + +A+     ++  +G L  GVAH+ N+    +I   D+++ 
Sbjct: 673 RINELLEERVDEALIEKAQAEAQLVHAQRMEAVGRLTGGVAHDFNNLLTVVIGALDIILR 732

Query: 459 DAFDSAMVRDMARRIRSEGQRVAAITHNLLAFARERKPPPPPALVDVKVVLRDTLELTAA 518
              D+A  + +     +  +R  ++TH LLAF+R +   P P  +D+  ++R++  L   
Sbjct: 733 SE-DAAKRKKLGEAALAAARRGESLTHQLLAFSRRQALRPEP--IDLNALIRESEPLLRR 789

Query: 519 QMRAEGILLEVSCSSGALHVLGRTRELQQVFLNIVSNARHALNAIPGSAARCLSINAEPR 578
            +  E +  +V    G         + +   LN++ NAR AL  + G+  R   I  + R
Sbjct: 790 AV-GEAVDFKVKLKRGGAPANVDPAQFEAALLNLIVNARDALGDVTGAKGRQARITVQTR 848

Query: 579 AA-------GSCVSGPVVSVSFRDTGGGIDPSIRDRVMEPFFTTKGEGRGTGLGLSISNA 631
           A            +G  V VS  D G G+ P IRDRV EPFFTTKG G+GTGLGLS    
Sbjct: 849 ACTVEAGQIAELAAGDYVCVSVADNGEGMSPDIRDRVFEPFFTTKGVGKGTGLGLSQVYG 908

Query: 632 IIEDHGGVLCIESDGETGTCVTVELPQM 659
                GG + I S+   G  + + LP +
Sbjct: 909 FARQSGGGVQIISEPGRGAEICIFLPPL 936



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 8/150 (5%)

Query: 271 EADLRAAARLHAALAEASSRQFDRQSALLDRVFDEVPAGICLMDITGRVLHLNRAMADVV 330
           E   R  A +  A AE  +R+ +++      + D  P  I +         +NRA  D  
Sbjct: 402 EVAARTWAEVERARAENETRESEQR---FRAIADTAPVLIWVTKQDRTRAFVNRAYVDFH 458

Query: 331 GASETELVGTDCFAMLHPADRAAARALFMHDLENAGSPEGFHELKEYRFLRKDGTARECQ 390
           G+    ++  D  + LHP D+A    +    +    + E F    E R+ R DG  R  +
Sbjct: 459 GSDYQTVLNLDWRSALHPEDQA---RILAESINGEATREPFS--MEARYRRHDGEWRWLK 513

Query: 391 VASAMLRDGDGPILGMAVVTDVTEMRRIKA 420
             S     G   +  + V  DVT+MR  +A
Sbjct: 514 SFSRPRLAGQEVVGFVGVAFDVTDMRTAQA 543