Pairwise Alignments

Query, 665 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 880 a.a., two component sensor kinase from Agrobacterium fabrum C58

 Score =  118 bits (296), Expect = 1e-30
 Identities = 124/468 (26%), Positives = 193/468 (41%), Gaps = 48/468 (10%)

Query: 205 PEDIATRRREEVLRCFETGCAV--EFEDTQDGRTYHHF-VRPIPARDHGATVVGEVAVYS 261
           PED A  R E  LR  E G      +   + G +Y     R  P RD   T++    V S
Sbjct: 437 PEDRAAAR-EAFLRSVEAGIPYLQRYRQLRAGGSYRWTETRAEPLRDDTGTIIYWYGVSS 495

Query: 262 LDVTLPRRAEADLRAAARLHAALAEASSRQFDRQSALLDRVFDEVPAGICLMDITGRVLH 321
                      D+        AL E+          L   ++  +P G  +        +
Sbjct: 496 -----------DIHDLITTQEALRESERHLQQLVETLPALIYCALPDGKPIYRSQRLRQY 544

Query: 322 LNRAMADVVGASETELVGTDCFAMLHPADRAAARALFMHDLENAGSPEGFHELKEYRFLR 381
           L   + D  G  ++ L GT   A++HP D A  +  + H L   G P     L+ +R  R
Sbjct: 545 LGFNLEDTDGFGKSRLDGT-LDAVIHPDDLAVVKEHYAHSLAT-GEPY----LQRHRLRR 598

Query: 382 KDGTARECQVASAMLRDGDGPILGM-AVVTDVT-------EMRRIKAEAARMGQLATIGE 433
            DG  R  +  ++ +R+GDG I     +  D+        E+ R     AR  Q A++ E
Sbjct: 599 FDGVYRWVETRASAMRNGDGEIAQWNGICLDIEDQVQAQEELSRAHENLARSSQAASLAE 658

Query: 434 LAAGVAHEINSPANAIIN----CADLLMEDAFDSAMVRDMARRIRSEGQRVAAITHNLLA 489
           L+A +AHE+N P +A++N    C   L  +  +    +    RI       A +   + A
Sbjct: 659 LSASIAHEVNQPLSAVMNYSSACQRWLTAEPPNIERAQKTLERIVQSANSAADVVSRIRA 718

Query: 490 FARERKPPPPPALVDVKVVLRDTLELTAAQMRAEGILLEVSCSSGALHVLGRTRELQQVF 549
             R+          ++  V+R   +L A +     I + V   SG L V     ++QQV 
Sbjct: 719 LFRQSTDKRDS--TELGAVVRQARDLLAEEAGRRRIRMTVEGESGLLLVPFDRVQIQQVL 776

Query: 550 LNIVSNARHALNAIPGSAARCLSINAEPRAAGSCVSGPVVSVSFRDTGGGIDPSIRDRVM 609
           +N++ N   A+ ++     R L + A         +G +V +   D G G+     DR+ 
Sbjct: 777 VNLLRNGMDAMASVANE--RVLQVRA-------FRAGDMVRIEVADRGRGV--QFPDRIF 825

Query: 610 EPFFTTKGEGRGTGLGLSISNAIIEDHGGVLCIESDGETGTCVTVELP 657
           EPFFTTK +  G G+GL+I  +IIE H G L  E +   G+     LP
Sbjct: 826 EPFFTTKDQ--GMGMGLAICRSIIEAHEGQLWAEKNEPIGSKFVFTLP 871



 Score = 67.0 bits (162), Expect = 4e-15
 Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 30/209 (14%)

Query: 202 RFLPEDIATRRREEVLRCFETG--CAVEFEDTQ-DGRTYHHFVRPIPARDHGATVVGEVA 258
           R +  D + R  E + RC  TG     E+   + DG    H     P RD    + G   
Sbjct: 304 RGIHPDDSDRAAETLRRCLRTGEHWNCEYRAARADGSYVWHRAAARPTRDEQGRITGWYG 363

Query: 259 VYSLDVTLPRRAEADLRAAARLHAALAEASSRQFDRQSALLDRVFDEVPAGICLMDITGR 318
             +LD+ + +R EA LR   R                   L ++ D VPA I      G 
Sbjct: 364 T-ALDIDVYKRTEAALRERERQ------------------LQQLIDTVPALIWSTMADGA 404

Query: 319 VLHLNRAMADVVGASETELV---GTDCFAMLHPADRAAARALFMHDLENAGSPEGFHELK 375
             ++NR   +V GA+  ++    G+    ++HP DRAAAR  F+  +E AG P     L+
Sbjct: 405 PAYVNRQFTEVTGATLEDMTAPNGSPSLGVVHPEDRAAAREAFLRSVE-AGIP----YLQ 459

Query: 376 EYRFLRKDGTARECQVASAMLRDGDGPIL 404
            YR LR  G+ R  +  +  LRD  G I+
Sbjct: 460 RYRQLRAGGSYRWTETRAEPLRDDTGTII 488



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 288 SSRQFDRQSALLDRVFDEVPAGICLMDITGRVLHLNRAMADVVGASETEL---VGTDCFA 344
           S+R  D  +    +V + +       D  G  +++  A     G S   L    G   F 
Sbjct: 15  SARPPDIDAVEAAKVVERIIGNAWAADANGNFIYVTPAALAFFGISLESLNSQSGESAFG 74

Query: 345 ---MLHPADRAAARALFMHDLENAGSPEGFHELKEYRFLRKDGTARECQVASAMLRDGDG 401
              ++HP D  +A A +   L       G H   E+R LR  G     +     +RDG+G
Sbjct: 75  WKRVIHPEDYESAAAAWRRCLRT-----GEHYNVEHRMLRATGVYGWARSTGQPIRDGNG 129

Query: 402 PILG 405
            ILG
Sbjct: 130 VILG 133