Pairwise Alignments

Query, 442 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 426 a.a., TRAP transporter large permease from Pseudomonas fluorescens SBW25

 Score =  201 bits (512), Expect = 3e-56
 Identities = 130/435 (29%), Positives = 228/435 (52%), Gaps = 32/435 (7%)

Query: 9   VLIGVLVGLVLMGMHIAIALFGVAFVGIWLIRDNIDLAFRMLELTAYSGIADYLFATIPL 68
           +L+G  + L+L+GM +A AL   A +G W I    D+ F+ L +    G+  +    IP 
Sbjct: 5   ILLGSFIALILIGMPVAYALGLSALIGAWWI----DIPFQALMIQVAGGVNKFSLMAIPF 60

Query: 69  FVLMGLLVSVSNVGRDTFQVAEELLRRMICGLGVATVAANTIFAAVTGVSIASAAVFTRV 128
           FVL G +++   + R     A  L+  +  GL +  + A+T F A++G S+A  A    V
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV 120

Query: 129 AVPEMTRHGYRPAFSAGTVAGSSVLGMLIPPSLLLIIYGILA--EVSIGGMFLAGILPGL 186
            +PEM R GY   F+       SV  +L PPS   ++Y + A   VSI  +F+AG++PGL
Sbjct: 121 LIPEMERRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGVVPGL 180

Query: 187 MLAGGFVVMLIGLTLAFPRFVLADPDAVKARKRD---TDLTPM-PAREMIAKLTPIVLLV 242
           +++   +V+ +                + A+KR+    D+ P+  A ++ A     ++ +
Sbjct: 181 LMSACLMVLCL----------------IFAKKRNYPKGDVIPLKQALKIAADALWGLMAM 224

Query: 243 ILVLGGLYTGFFTPTEAGGIGAFGALIVAL-SRRSLDRHKLWQVMKQTGVISVSILLLLV 301
           +++LGG+ +G FT TE+  I    A  V +   R     +L ++M +T V ++SI+++L+
Sbjct: 225 VIILGGILSGIFTATESAAIAVLWAFFVTMFIYRDYKWRELPKLMHRT-VRTISIVMILI 283

Query: 302 A-ASFYSRMLAIAGLPNAITGLVTDSGFGPLGFLFFYAVIILLMGMILDSTSILLIMVPI 360
           A A+ +  ++ +  +P  IT +           L    V++LL+G ++D   ++LI+ PI
Sbjct: 284 AFAASFGYIMTLMQIPAKITTMFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPI 343

Query: 361 AAPIAQGMGIDLMHFGIVTVLAVEIGLLTPPFGISVFTVHNTLNDPDVSVESIFAATLPF 420
             P+  G+G+D +HFG++ ++ + IGL+TPP G  +F          VS+E    A LPF
Sbjct: 344 LLPVVLGLGVDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAV---GKVSIEKTVKALLPF 400

Query: 421 IAVMLLVLVIVALVP 435
             V+ L+L+ V  +P
Sbjct: 401 YGVLFLILMAVTYIP 415