Pairwise Alignments

Query, 442 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 426 a.a., TRAP transporter large permease from Pseudomonas fluorescens SBW25

 Score =  216 bits (551), Expect = 8e-61
 Identities = 132/429 (30%), Positives = 232/429 (54%), Gaps = 29/429 (6%)

Query: 13  VLVGLVLMGMHIAIALFGVAFVGIWLI-RDNID-LAFRMLELTAYSGIADYLFATIPLFV 70
           +L   + +G+ IAI+L     V I +  +D++  LA ++ E +       Y F  IP F+
Sbjct: 9   LLFVFMFLGVPIAISLGLSGAVSILMFSQDSVSSLAIKLFETSDA-----YTFLAIPFFL 63

Query: 71  LMGLLVSVSNVGRDTFQVAEELLRRMICGLGVATVAANTIFAAVTGVSIASAAVFTRVAV 130
           L G  ++   V +     A   +  +  GL +A V A  +FAA++G S A+ A    +AV
Sbjct: 64  LSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAV 123

Query: 131 PEMTRHGYRPAFSAGTVAGSSVLGMLIPPSLLLIIYGILAEVSIGGMFLAGILPGLMLAG 190
             M R GY   F AG +  +  LG+LIPPS+++++Y    E S+G +F+AG++PGL    
Sbjct: 124 AGMVRSGYPKEFGAGIICNAGTLGILIPPSIVMVVYSAATETSVGKLFMAGVIPGL---- 179

Query: 191 GFVVMLIGLTLAFPRFVLADPDAVKARKRDTDLTPMPAREMIAKLTPI---VLLVILVLG 247
                L+GL L    +++A    + A+ R T       RE +         +LL++++LG
Sbjct: 180 -----LLGLMLMIAIYIVARIKKLPAQPRAT------FREWLTCARRAFWGLLLLVIILG 228

Query: 248 GLYTGFFTPTEAGGIGA-FGALIVALSRRSLDRHKLWQVMKQTGVISVSILLLLVAASFY 306
           G+Y+G FTPTEA  + A + A +     + +      +V+ ++G +++ ++ ++  A  +
Sbjct: 229 GIYSGMFTPTEAAAVAAVYSAFVALFVYKDMKLRDCPKVLLESGRLAIMLMFIIANAMLF 288

Query: 307 SRMLAIAGLPNAITGLVTDSGFGPLGFLFFYAVIILLMGMILDSTSILLIMVPIAAPIAQ 366
           + +L    +P  IT  V   G  P+GFL    V++L+ G  ++ ++I+LI+ PI  PIA 
Sbjct: 289 AHVLTTEQIPQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAM 348

Query: 367 GMGIDLMHFGIVTVLAVEIGLLTPPFGISVFTVHNTLNDPDVSVESIFAATLPFIAVMLL 426
            +GID +H GIV V+ +EIGL+ PP G+++F    T     +++     A LP++ ++L+
Sbjct: 349 KLGIDPIHLGIVMVVNMEIGLVHPPVGLNLFV---TSAVTGLTLGQTIRAALPWLMILLV 405

Query: 427 VLVIVALVP 435
            L++V  +P
Sbjct: 406 FLIMVTYLP 414