Pairwise Alignments

Query, 191 a.a., sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 190 a.a., sigma-54 modulation protein from Agrobacterium fabrum C58

 Score =  136 bits (343), Expect = 2e-37
 Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 2/188 (1%)

Query: 1   MRYQITGKQIDIGEALQRHVKAELSEVVGKYAERPTDANVVFSKDAYNHVCEATVHLSTG 60
           M  +++GK ++IGE+ ++ ++  +   V KY +      V   K       +  +HL TG
Sbjct: 1   MSVRVSGKHMEIGESFRQRIEDNIGLAVTKYFDGGYSGQVTVEKSGSRFAADCKLHLDTG 60

Query: 61  LTAQAKASAHEIYAAFDKCSEKMEKQLRRYKRRLKNHHRDRTEPVALSGASTYILDGSEG 120
           +   A   A++  A+FD  +E++EK+LRRYKR+LK+HH       AL   +  ++D    
Sbjct: 61  VVLHAAGQANDPQASFDAAAERIEKRLRRYKRKLKDHHSGSNG--ALPEIAYTVMDAVPD 118

Query: 121 SDEHEPETLQPIIVAEMETTIPSVSVGEAVMQMELAEAPVLVFRNEGHGGINVVYRRDDG 180
            D   PE   P IVAE    I ++SV  AVM +++ + PVL+FR+ G   +N+VYRR DG
Sbjct: 119 EDHEVPEDYAPTIVAESSKQIKTMSVASAVMALDMTDEPVLLFRSPGKEYLNIVYRRHDG 178

Query: 181 NIGWIDTK 188
           NIGWID +
Sbjct: 179 NIGWIDAE 186