Pairwise Alignments

Query, 372 a.a., DNA polymerase III, beta subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 368 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  205 bits (522), Expect = 1e-57
 Identities = 124/367 (33%), Positives = 208/367 (56%), Gaps = 13/367 (3%)

Query: 10  LLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQVERAG---A 66
           +L A+     +VERR+T+PILANVL+   G  V    +DL+I++  R TA+++      A
Sbjct: 11  VLAALQSVAGIVERRHTLPILANVLLRKTGSQVQLTTSDLEIQI--RTTAELDGDSGNFA 68

Query: 67  TTVPAVTLHEIVRKLPDGALVALTHDTAKGRLEVSAGRSNFSLATLPREDFP-VMTTTEY 125
           TT+ A  L +I+R +P    V+L  ++  G+L +  G+S F+L ++P EDFP V  +  +
Sbjct: 69  TTLGARKLIDILRTMPGDQTVSL--ESNAGKLILKGGKSRFTLQSMPAEDFPLVQESASF 126

Query: 126 TCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDGHRLARI 185
              F+ P   L+ L  +  FA++  + RYYLNG+ + VA+G   + L  VATDGHRLA  
Sbjct: 127 GPVFSVPQKTLKSLLSQVSFAMAVHDIRYYLNGI-LFVAEG---KQLSLVATDGHRLAFA 182

Query: 186 DADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLTSKVIDG 245
            + L D       VI+PRKTV EL++LL D E  I +  +  + +F+   +   +K+++G
Sbjct: 183 SSTL-DVEVPKQEVILPRKTVLELQRLLSDKEGAIEMQFAANQAKFSFDGMEFVTKLVEG 241

Query: 246 TFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILSVNAPDS 305
            FPDY RVIP ++   + +  +    ++ R A ++SE+ + V+L ++   L ++ +  + 
Sbjct: 242 KFPDYNRVIPKNHKNIVTLGRAPLLASLQRTAIMTSEKFKGVRLNVEPGVLRVASSNAEQ 301

Query: 306 GAAEEELAVAYGDERLEIGFNAKYLLEIASQVDRENAVFLFNSAADPTMMREGSDSSAIY 365
             A +EL + YG + +EIGFN  YL++    + +E      +      ++    D++  Y
Sbjct: 302 EEAVDELDIDYGGDTIEIGFNVTYLIDALQNMSQEMVRIELSDGNSSALVTNPDDNAFKY 361

Query: 366 VVMPMRV 372
           VVMPMR+
Sbjct: 362 VVMPMRI 368



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 4   SIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQVER 63
           S+ + TL   +SQ    +   +    L  +L  AEG  +S  ATD         T  VE 
Sbjct: 131 SVPQKTLKSLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFASSTLDVEV 190

Query: 64  AGATTV-PAVTLHEIVRKLPD 83
                + P  T+ E+ R L D
Sbjct: 191 PKQEVILPRKTVLELQRLLSD 211