Pairwise Alignments

Query, 516 a.a., flagellin domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 313 a.a., flagellin from Agrobacterium fabrum C58

 Score =  138 bits (347), Expect = 3e-37
 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 16/233 (6%)

Query: 1   MSSILTNNSAMVALQTLKSINSNLSKTQDEISTGKSVATAKDNAAIWSISKVMEADVKGF 60
           M+SILTN +AM ALQTL++I+  L  TQ  +S+G  V +A DNAA WSI+  M +D    
Sbjct: 1   MTSILTNTAAMSALQTLRAISGQLEDTQSRVSSGLRVKSASDNAAYWSIATTMRSDNMAL 60

Query: 61  KAISESLSLGESTVAVARNASETVTDLLTEIKGKIVASQEENVDRAKIQTDIDALKEQIG 120
            A+ ++L LG + V VA +A E+  +++ EIK KIVA+ EE VD+ KIQ +ID LK+Q+ 
Sbjct: 61  SAVQDALGLGAAKVDVAYSAMESTVEVVKEIKSKIVAATEEGVDKTKIQEEIDQLKKQLE 120

Query: 121 SVISAAQFNGKNLVNSYDQSSILSSLDRDSSGTVTANSISFT------GQ-------NLT 167
           S+   A F+G+N +      +++S   RD  GTV+     +T      G         LT
Sbjct: 121 SIAQGASFSGENWLLGTGAKTVVSGFVRDGGGTVSVTKTDYTLIDTTAGTTTANVLFGLT 180

Query: 168 SASGTLETASA-LDRIGTIDDAGTYTVGNGASLTNTANTTDLVLANDLADSAT 219
            +  TL+T    + + GT      + +     L N+A      + N L D  T
Sbjct: 181 GSPATLDTTKGIIGQPGTASGISVWDI--DLKLFNSATPPTYTIGNLLTDVET 231



 Score =  104 bits (259), Expect = 5e-27
 Identities = 98/298 (32%), Positives = 139/298 (46%), Gaps = 35/298 (11%)

Query: 243 DLSNIVAAGLSNLGVEGVTTTSDGVDTVTIASTNKFEAIAIQGSSS----GATTVDVNGA 298
           D  + V++GL       V + SD     +IA+T + + +A+         GA  VDV  A
Sbjct: 26  DTQSRVSSGLR------VKSASDNAAYWSIATTMRSDNMALSAVQDALGLGAAKVDV--A 77

Query: 299 GAGVEETLVARAETVSLGGAGNTGGVVNEGDGFQIALGGQAFNYVAKDGDTLND---VAT 355
            + +E T+    E  S   A    GV       +I    +    +A+      +   + T
Sbjct: 78  YSAMESTVEVVKEIKSKIVAATEEGVDKTKIQEEIDQLKKQLESIAQGASFSGENWLLGT 137

Query: 356 GLKRVL-----DAGGLEGIEVKVNISDDPTIDPPTIQIDNDGATAVALTVDD-----GAD 405
           G K V+     D GG   +        D T    T  +   G T    T+D      G  
Sbjct: 138 GAKTVVSGFVRDGGGTVSVTKTDYTLIDTTAGTTTANV-LFGLTGSPATLDTTKGIIGQP 196

Query: 406 GVASGGLVGLDGIDVTTQEGAE-------NALANIESLIETSIDAAAQFGSVQSRIETQS 458
           G ASG  + +  ID+     A        N L ++E+  ++   A+A  GS++ RI  Q 
Sbjct: 197 GTASG--ISVWDIDLKLFNSATPPTYTIGNLLTDVETAFQSISSASAALGSIKMRIGLQE 254

Query: 459 DFIGKLTDSLKSGIGSLVDADMEEASARLQALQVQQQLGTQSLSIANQAPQNILALFR 516
           DF+ KLTDS+  GIG LVDADM E S +L+ALQ QQQLG QSLSIAN + +NIL+LFR
Sbjct: 255 DFVSKLTDSIDKGIGRLVDADMNEESTKLKALQTQQQLGIQSLSIANTSSENILSLFR 312