Pairwise Alignments

Query, 289 a.a., chemotaxis protein MotA (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 295 a.a., proton conductor component of flagella motor from Escherichia coli BL21

 Score =  200 bits (508), Expect = 4e-56
 Identities = 107/286 (37%), Positives = 172/286 (60%), Gaps = 3/286 (1%)

Query: 1   MIGIIGIVVVFVMVFGGYLAAGGKMGIILKSLPFEMTMIGGAAVGAFVIGNDMSGIKHTL 60
           M+ ++G +VV   VFGGYL  GG +G + +  P E+ +I GA +G+F++GN+   IK TL
Sbjct: 1   MLILLGYLVVLGTVFGGYLMTGGSLGALYQ--PAELVIIAGAGIGSFIVGNNGKAIKGTL 58

Query: 61  KDVKKVFKGPTWLAQDYKDLLCLLFELIRLARQNPV-GLEEHIEDPAASNIFSKYPKIMA 119
           K +  +F+   +    Y DLL LL+ L+  +RQ  +  LE  IE+P  S IF+ YP+I+A
Sbjct: 59  KALPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILA 118

Query: 120 DREAIDLIADTMRSAAMNYDDPHQVEEVLEKRIESNHEHAMHGSHALQTVADGLPALGIV 179
           D   +D I D +R     + +  ++E ++++ IE++   A   +++L  V D LPA GIV
Sbjct: 119 DSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIV 178

Query: 180 AAVLGVIKTMGSIDQPPEILGKLIGGALVGTFLGVFLAYGLVGPFSAKVKSVVEEDAHFY 239
           AAV+GV+  +GS D+P   LG LI  A+VGTFLG+ LAYG + P +  ++    E +   
Sbjct: 179 AAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMM 238

Query: 240 LLIREVLVANLHKHTVNNCIEVGRQNTPSHIRPTFSDLEEALKQLK 285
             ++  L++NL+ +     +E GR+   S  RP+F +LEE ++ +K
Sbjct: 239 QCVKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVK 284