Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECOR27

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 9/235 (3%)

Query: 15  VFILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADWVL 74
           ++   LLR+ A ++  P   ER+VP R+KL L + +T  + P+L A   P     A W+ 
Sbjct: 15  LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLA 74

Query: 75  AGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQ---PALGNIFL 131
               +++ G+ LGFT +    A++ AG I      L+  F   V P      P L  I  
Sbjct: 75  V--QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLS--FATFVDPASHLNMPVLARIMD 130

Query: 132 MAGLALAALSGLHVHLTEAFLLSFLLLPVGNFP-NSDIISAWAIADVSRMFVVGFTLSAP 190
           M  L L      H+ L    + +F  LP+G  P NS+   A   A  S +F+ G  L+ P
Sbjct: 131 MLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAG-SLIFLNGLMLALP 189

Query: 191 FVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLF 245
            +   +  NLALG +NR  PQL +  +G P     G++L A  +P +     +LF
Sbjct: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLF 244