Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 260 a.a., flagellar type III secretion system protein FliR from Dickeya dadantii 3937

 Score = 86.7 bits (213), Expect = 5e-22
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 9/228 (3%)

Query: 13  FPVFILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPADW 72
           F  F   L+RI A ++  P F ER++  R+K+ L + +T ++ P++  T  P       W
Sbjct: 13  FNQFFWPLVRILALISTAPIFSERSITRRVKIGLGVLITIVITPSIPHTSIPVFSAAGIW 72

Query: 73  VLAGGAEVVSGLFLGFTFRLMVFALQVAGTIAA--QSTSLAQVFGGAVTPDPQPALGNIF 130
           +L    +V+ G+ LGF  +L   A+++AG I       S A  F  +  P+  P +  + 
Sbjct: 73  MLF--QQVLIGVMLGFAMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPN-MPVIARLM 129

Query: 131 LMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAP 190
            +  L L      H+ L    + SF  +P+   P S  +         R+F  G  L+ P
Sbjct: 130 NLLALLLFLSMNGHLWLISLLVDSFHTIPISAEPISGNVFMTLAEAGGRIFSNGLMLALP 189

Query: 191 FVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLL 238
            +   +  N+ALG ++R  PQL +  +G P     G+    ++V FL+
Sbjct: 190 LITLLLTINMALGLLSRLAPQLTIFAIGFPITLFAGI----ITVGFLI 233