Pairwise Alignments

Query, 257 a.a., type III secretion system inner membrane R protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 251 a.a., flagellar biosynthesis protein FliR from Caulobacter crescentus NA1000 Δfur

 Score =  108 bits (269), Expect = 1e-28
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 13  FPVFILALL--RIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLATGAPPLERPA 70
           F V++ AL+  R+GA +  +P  G++A+P RI+L   L L AL+L  L+     P+  P+
Sbjct: 8   FQVYVAALVFARVGAMVMTMPGIGDQAIPARIRLSFAL-LMALILAPLVQNTVGPI--PS 64

Query: 71  DWVLAGGA---EVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFGGAVTPDPQ---P 124
                GGA   EV+ GL +G   RL + +L  AG I +  T+L+  F  +  P  +    
Sbjct: 65  TLGGLGGAVIHEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLS--FAQSTNPSMEGSST 122

Query: 125 ALGNIFLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVG 184
           A+     M GL L   + LH     A + S+ + P       +  +A A+  V++ F +G
Sbjct: 123 AVATFLSMLGLTLVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLG 182

Query: 185 FTLSAPFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHW 241
             L+AP +  ++++NLA G + R MP   + FV +P   + GL+L ALS+  +   W
Sbjct: 183 VQLAAPVIVFSLVFNLATGLVGRIMPAFQIFFVASPLSVILGLSLLALSLSGIAMVW 239