Pairwise Alignments

Query, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 226 a.a., N-acetylmuramoyl-L-alanine amidase from Magnetospirillum magneticum AMB-1

 Score =  149 bits (376), Expect = 4e-41
 Identities = 88/193 (45%), Positives = 107/193 (55%), Gaps = 7/193 (3%)

Query: 5   VVLHYTAMADAQGAADWLCAPRAQVSAHYVIGRDGAVMRLVPEHLRAWHAGAGAWGGCTD 64
           +VLHYT M   + A   LC  +A+VSAHYVI  DG V  LVPE +RAWHAGA +W G  D
Sbjct: 23  LVLHYTGMESGEAALARLCDAQAKVSAHYVIEEDGRVFALVPEDMRAWHAGASSWRGEPD 82

Query: 65  VNSASIGIELDNDGTS----PFSAPLMDALEGLLGDILTRHGIPRKGVIGHSDLAPGRKI 120
           VNS SIGIEL N G       F    +++L  L   IL RH IP + V+GHSD+AP RK 
Sbjct: 83  VNSRSIGIELVNPGHEFGYRAFPGAQIESLIRLCRGILERHPIPARNVVGHSDVAPTRKE 142

Query: 121 DPGPRFDWRRLA-RRGLSIWPEGAAAGAAPDPARFAADLARFGMTAEVDAETRLAAFRAR 179
           DPG  F W  LA R G+ +WP G      P+     + LA  G     D +  L AF+  
Sbjct: 143 DPGELFPWADLAERHGIGLWPCGEPTPLPPEHV-LLSGLAHVGYDIH-DPKATLTAFQRH 200

Query: 180 FRPGATGPLAPED 192
           FRP     L  E+
Sbjct: 201 FRPWKVDGLVDEE 213