Pairwise Alignments

Query, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 255 a.a., N-acetylmuramoyl-L-alanine amidase from Serratia liquefaciens MT49

 Score = 92.4 bits (228), Expect = 7e-24
 Identities = 73/214 (34%), Positives = 99/214 (46%), Gaps = 38/214 (17%)

Query: 3   RLVVLHYTAMADAQGAADWLCAPRAQVSAHYVI-----------GRDGA-VMRLVPEHLR 50
           R +VLHYTA   A             VSAHY++           G  G  +  LV E  R
Sbjct: 20  RFLVLHYTAQNFADSVQS---LTGKSVSAHYLVPDPEDPTYKAAGFSGVRIFNLVDEVER 76

Query: 51  AWHAGAGAWGGCTDVNSASIGIELDN----DGTS----PFSAPLMDALEGLLGDILTRH- 101
           AWHAG   WG  +++N  +IGIE+ N    DG      PF+   + A+  L  +IL R+ 
Sbjct: 77  AWHAGTSQWGNRSNLNDTAIGIEIVNLASGDGEDITFPPFNPQQIAAVTQLTQNILQRYP 136

Query: 102 GIPRKGVIGHSDLAPGRKIDPGPRFDWRRLARRGLSIWPEGAA---------AGAAPDPA 152
            I    V+ HSD+APGRK DPGP+F W +L + G+  W + A              P   
Sbjct: 137 DITPINVVAHSDIAPGRKSDPGPQFPWHQLYQAGVGAWYDDAVKQRYQHEYQCQGVPTQQ 196

Query: 153 RFAADLARFG--MTAEVDAE---TRLAAFRARFR 181
              A  AR+G   +A  +AE     + AF+  FR
Sbjct: 197 DLLALFARYGYDTSAATNAEGYRQLVRAFQLHFR 230