Pairwise Alignments

Query, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 278 a.a., N-acetylmuramoyl-L-alanine amidase from Serratia liquefaciens MT49

 Score =  122 bits (306), Expect = 7e-33
 Identities = 82/210 (39%), Positives = 109/210 (51%), Gaps = 33/210 (15%)

Query: 3   RLVVLHYTAMADAQGAADWLCAPRAQVSAHYVIGRDGAVMR-------LVPEHLRAWHAG 55
           R +V+HYTA  D   +   L      VSAHY++     +++       LVPE LRAWHAG
Sbjct: 46  RFLVMHYTA-EDFHSSLKTLTDEH--VSAHYLLPAHPPLVQGKPVAFQLVPEALRAWHAG 102

Query: 56  AGAWGGCTDVNSASIGIELDNDGTS---------PFSAPLMDALEGLLGDILTRHGIPRK 106
           A  W G T++N  SIGIE+ N G +         P++   +  L  L  DI+ R+GI   
Sbjct: 103 ASTWRGRTNLNDTSIGIEIVNRGFNRTLLFTHWQPYTPQQIALLIPLSRDIIQRYGIQPT 162

Query: 107 GVIGHSDLAPGRKIDPGPRFDWRRLARRGLSIWPE---------GAAAGAAPDPARFAAD 157
            V+GHSD+AP RK DPGP F WR+LA+ G+  WP+         G    AA   AR    
Sbjct: 163 DVVGHSDIAPQRKQDPGPLFPWRQLAQAGIGAWPDEQQVQKLLAGRDKQAAVPLARLIEK 222

Query: 158 LARFGMTAEVDAETR-----LAAFRARFRP 182
           LAR+G   +   + R     LAAF+  FRP
Sbjct: 223 LARYGYGIDARWDVRQQKNVLAAFQMHFRP 252