Pairwise Alignments

Query, 389 a.a., carbamoyl-phosphate synthase, small subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 388 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  380 bits (976), Expect = e-110
 Identities = 203/388 (52%), Positives = 250/388 (64%), Gaps = 6/388 (1%)

Query: 5   PDTPTACLVLADGTVFYGRGFGAVGTTSAELCFNTAMTGYQEIMTDPSYAGQVVTFTFPH 64
           P  P A L LADGTVF G   GA G T+ E+ FNT++TGYQEI+TDPSY  Q+VT T+PH
Sbjct: 3   PVHPKALLALADGTVFTGVSIGATGQTTGEVVFNTSLTGYQEILTDPSYCQQIVTLTYPH 62

Query: 65  IGNTGVTAEDDEAADPVAAGMVVKWDPSEPSNWRAQGKLTEWLTRTGRIGIGGVDTRRLT 124
           IGNTGV AED EA+   AAG+++K  P   SN+R+   L+++L R G + I  +DTR LT
Sbjct: 63  IGNTGVNAEDVEASRVHAAGLIIKDLPLLASNFRSNETLSQYLQREGTVAIADLDTRALT 122

Query: 125 RQIRQQGAPHVALAHDPEGNFDLEALVAQARAFA----GLEGVDLAREVTCAQSYRWDEQ 180
           R++R  GA +  +   P G    EA  AQA A A     + G DLA+ V+    Y W + 
Sbjct: 123 RRLRTHGAQNGCILALPAGESITEAHRAQALAAAKAAPNMAGTDLAKVVSATAPYAWTQT 182

Query: 181 RWAWPEGYTRRTTPGHKVVALDYGAKRNILRCLASAGCDVTVMPATSTAEDVLAQNPDGV 240
            W    GY  +  P   VVA D+G K NILR L+  GC +TV+PA + A DV    P+GV
Sbjct: 183 EWQLGFGYGEQIAPRFHVVAYDFGVKYNILRMLSERGCKITVVPAQTPASDVFKLKPNGV 242

Query: 241 FLSNGPGDPAATGKYAVPMIKGVLEASDVPVFGICLGHQMLALALGAQTVKMNHGHHGAN 300
           FLSNGPGDP     YA+   + ++EA  VP FGICLGHQ+LALA GA+T KM  GHHGAN
Sbjct: 243 FLSNGPGDPEPCD-YAIAATREIVEAG-VPTFGICLGHQILALASGAKTFKMKFGHHGAN 300

Query: 301 HPVKDLETGKVEITSMNHGFTVDSQTLPHGVVETHRSLFDGSNCGIRMTDRPVFSVQYHP 360
           HPVKDL+ G+V ITS NHGF VD +TLP  +  TH SLFDG+  G+  TD+P F  Q HP
Sbjct: 301 HPVKDLDNGRVSITSQNHGFAVDEKTLPATLRATHVSLFDGTLQGLARTDQPAFCFQGHP 360

Query: 361 EASPGPQDSYYLFERFAAAMAARRAVTA 388
           EASPGP D  YLF+RF   M AR   TA
Sbjct: 361 EASPGPHDIGYLFDRFIDLMQARVPATA 388