Pairwise Alignments

Query, 725 a.a., excinuclease ABC, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens GW456-L13

 Score =  776 bits (2005), Expect = 0.0
 Identities = 396/662 (59%), Positives = 489/662 (73%), Gaps = 11/662 (1%)

Query: 25  FRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 84
           F++ T FEPAGDQP AI  + EG+  G   Q LLG TG+GKTF++A VI Q QRP ++LA
Sbjct: 4   FQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 144
           PNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAYVP SDT+IEK++ IN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 145 SATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRRN 204
           SAT+ALLER D IIV +VSCIYG+GS ETY  M   +  G   DQR+++  L   QY RN
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDRLDQRELLRRLADLQYTRN 183

Query: 205 DAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRIY 264
           D  F R +FRVRGD ++I PA  +  A++   F +E+ES++ FDPLTGE    L R   Y
Sbjct: 184 DMDFARATFRVRGDVIDIHPAESDFEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 265 ANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVCN 324
             SHYVTPR TL  A+  IK EL+ RL+ L +  KL+EAQRLEQRT FD+EM+   G CN
Sbjct: 244 PKSHYVTPRETLMGAVEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 384
           GIENYSRYL+GR  G  PPTL++Y+P +A++  DESHVSVPQ+G MYKGD  RK TL E+
Sbjct: 304 GIENYSRYLSGREAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 385 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQVE 444
           GFRLPS +DNRP++F+EW+++ PQ++FVSATP  +E E AG V  + V+RPTGL+DPQ+E
Sbjct: 364 GFRLPSALDNRPMRFDEWESISPQTIFVSATPGNYEAEHAGRVI-DMVVRPTGLVDPQIE 422

Query: 445 IRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 504
           IRP   QVDDLL E+ +  A   R LVTTLTKRMAEDLT+Y+ + G++VRY+HSDIDT+E
Sbjct: 423 IRPALTQVDDLLSEITKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564
           R+EI+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 565 NAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMAGL---- 620
           N  GR I+YADRITGSMERA+ ET RRR KQIA+N  +GITP+ V K+V D+M G     
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATVPG 602

Query: 621 -----YQGDVDMNRVTAKVEKPLHG-GNLETVLEGLRADMRKAAENLEFEEAARLRDEVK 674
                 +G        AK E  L   G +   ++ L   M   A +LEFE AA++RDE+ 
Sbjct: 603 SRSKKRKGMAKAAEENAKYEAELRSPGEIAKRIKALEEKMYALARDLEFEAAAQMRDEIG 662

Query: 675 RL 676
           +L
Sbjct: 663 KL 664