Pairwise Alignments

Query, 725 a.a., excinuclease ABC, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 673 a.a., excinuclease ABC subunit UvrB from Escherichia coli ECOR38

 Score =  776 bits (2005), Expect = 0.0
 Identities = 395/678 (58%), Positives = 500/678 (73%), Gaps = 29/678 (4%)

Query: 25  FRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 84
           F++ ++F+P+GDQP AI  L EG+ +G   Q LLG TG+GKTFT+A VI   QRP ++LA
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 144
           PNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP SDT+IEK++ +NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 145 SATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRRN 204
           SAT+A+LER DV++VASVS IYG+G  + Y  M   L  G   DQR I+  L   QY RN
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 205 DAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRIY 264
           D  FQRG+FRVRG+ ++I+PA  +D AL+   F EE+E ++ FDPLTG+   T+ R  IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 265 ANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVCN 324
             +HYVTPR  + QA+  IK+EL  R   L+   KLLE QRL QRT FD+EM+   G C+
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 384
           GIENYSR+L+GR PGEPPPTLF+Y+P + ++  DESHV++PQIGGMY+GD  RK TL E+
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 385 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQVE 444
           GFRLPS +DNRPLKFEE++A+ PQ+++VSATP  +ELE++GG   +QV+RPTGLLDP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 445 IRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 504
           +RPV  QVDDLL E+R+  A   R LVTTLTKRMAEDLTEY+ E G +VRY+HSDIDT+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564
           R+EI+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 565 NAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMA------ 618
           N  G+ I+Y D+IT SM +A+ ET RRR KQ  YNEEHGITP+ + K V D++A      
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604

Query: 619 ------------GLYQGDVDMNRVTAKVEKPLHGGNLETVLEGLRADMRKAAENLEFEEA 666
                        +   +V M+     +++ +H       LEGL   M + A+NLEFEEA
Sbjct: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH------ELEGL---MMQHAQNLEFEEA 655

Query: 667 ARLRDEVKRLEAVDLAIA 684
           A++RD++ +L   DL IA
Sbjct: 656 AQIRDQLHQLR--DLFIA 671