Pairwise Alignments

Query, 103 a.a., pentapeptide repeat protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 366 a.a., Similar to pipB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 27  LIGANLRGANLTGAELVGADFTGSNLENAILHGADISGANFTKTTGLTHEMLG 79
           L GA L GANLT   L  AD +G+NLE A+L  AD  GANF K   L+   LG
Sbjct: 170 LKGAVLTGANLTSENLCDADLSGANLEGAVLFMADCEGANF-KGANLSGTSLG 221



 Score = 43.1 bits (100), Expect = 3e-09
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLI-----GANLRGANLTGAELVGADFTGSNLEN---- 54
           G    HAN+   +   A L    +I     GAN+   NL+GA L+ AD +G+ L+     
Sbjct: 237 GATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIM 296

Query: 55  -AILHGADISGANFTKTTGLTHEMLGA 80
            AI+ GA ++ AN  K + ++  + GA
Sbjct: 297 AAIMEGAVLTRANLRKASFISTNLDGA 323



 Score = 42.7 bits (99), Expect = 4e-09
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLI-----GANLRGANLTGAELVGADFTGSNLENAILH 58
           G + +  N+   D   A L  A L      GAN +GANL+G  L  ++F  + LE++I+ 
Sbjct: 177 GANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMC 236

Query: 59  GADISGANFTKTTGLTHEMLGAAI 82
           GA +  AN T        +LG ++
Sbjct: 237 GATLDHANLTGANLQHASLLGCSM 260



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 3   DGVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADI 62
           D  + S A ++R D   A L  A ++ A + GA LT A L  A F  +NL+     GAD+
Sbjct: 271 DHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLD-----GADL 325

Query: 63  SGANFTKT 70
           + AN   T
Sbjct: 326 AEANLNNT 333



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 3   DGVDFSHANMVRVDAHDAKLNRARL-----IGANLRGANLTGAELVGADFTGSNLENAIL 57
           +G +F  AN+      D+    A L      GA L  ANLTGA L  A   G ++     
Sbjct: 206 EGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNC 265

Query: 58  HGADISGANFTKTTGLTHEMLGAAI 82
            GA++   N +  T +  +M GA +
Sbjct: 266 SGANMDHTNLSGATLIRADMSGATL 290



 Score = 36.2 bits (82), Expect = 4e-07
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELV----------GADFTGSNLE 53
           G     +N       D+ +  A L  ANL GANL  A L+          GA+   +NL 
Sbjct: 217 GTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLS 276

Query: 54  NAILHGADISGANFTKTTGLTHEMLGAAI 82
            A L  AD+SGA     T +   M GA +
Sbjct: 277 GATLIRADMSGATLQGATIMAAIMEGAVL 305



 Score = 33.5 bits (75), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 20  AKLNRARLIGANLRGANLTGAELVG-----ADFTGSNLENAILHGADISGANFTKTTGLT 74
           A L  A L   NL  A+L+GA L G     AD  G+N + A L G  +  +NF       
Sbjct: 173 AVLTGANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLED 232

Query: 75  HEMLGAAI 82
             M GA +
Sbjct: 233 SIMCGATL 240



 Score = 29.3 bits (64), Expect = 4e-05
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 39  GAELVGADFTGSNLENAILHGADISGAN 66
           G  L GA  TG+NL +  L  AD+SGAN
Sbjct: 167 GMNLKGAVLTGANLTSENLCDADLSGAN 194