Pairwise Alignments

Query, 103 a.a., pentapeptide repeat protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 247 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 54.3 bits (129), Expect = 9e-13
 Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 3   DGVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVG-ADFTGSNLENAILHGAD 61
           DG DF+ A + R D   A LN ++    NL  A   GA L G  DFT + L    + G D
Sbjct: 146 DGTDFTKAELGRADFEGASLNGSKFSLTNLSRARFGGATLGGPVDFTSAFLLLTRIEGVD 205

Query: 62  ISGANFTKTTGLTHEMLGAAIGSQDTILPEGFVFPQDW 99
           +S A     TGL  + +  A G   T LP G   P  W
Sbjct: 206 LSTA-----TGLDQKQIDIACGDAKTKLPNGLTAPASW 238



 Score = 43.5 bits (101), Expect = 2e-09
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 1   MADGVDFSHANMVRVDAHDAKLNRARLIG-----ANLRGANLTGAELVGADFTGSNLENA 55
           M  G DF++ ++       A L +A+LI      ANL+GANLT  E   +DF+ ++  NA
Sbjct: 69  MLYGTDFTYTDLRGSSLKGANLEKAKLIRTALGEANLQGANLTKVEAYRSDFSAADATNA 128

Query: 56  ILHGADISGANFTKT----TGLTHEMLGAA 81
               A++    F KT    T  T   LG A
Sbjct: 129 KFVNAEMQRTKFEKTKLDGTDFTKAELGRA 158



 Score = 35.4 bits (80), Expect = 4e-07
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADIS 63
           G+D+   N   +    + L+ A L G +    +L G+ L GA+   + L    L  A++ 
Sbjct: 47  GIDWRECNKRMLMLGSSNLDSAMLYGTDFTYTDLRGSSLKGANLEKAKLIRTALGEANLQ 106

Query: 64  GANFTK 69
           GAN TK
Sbjct: 107 GANLTK 112



 Score = 30.0 bits (66), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 32 LRGANLTGAELVGADFTGSNLENAILHGADISGANFTKT 70
          L  +NL  A L G DFT ++L  + L GA++  A   +T
Sbjct: 60 LGSSNLDSAMLYGTDFTYTDLRGSSLKGANLEKAKLIRT 98