Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 987 a.a., excinuclease ABC subunit UvrA from Rhodanobacter sp. FW510-T8

 Score = 1142 bits (2953), Expect = 0.0
 Identities = 579/954 (60%), Positives = 716/954 (75%), Gaps = 16/954 (1%)

Query: 7   IEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
           I +RGAR HNLK+ID+D+PRDRL+VITGLSGSGKSSLAFDTIYAEGQRRYVESLS+YARQ
Sbjct: 4   IRIRGARTHNLKNIDIDLPRDRLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSYARQ 63

Query: 67  FLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYSPAT 126
           FL MM+KPDVDHI GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+ARVGTP  P  
Sbjct: 64  FLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRCPDH 123

Query: 127 GLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVDGAF 186
           G+P+EAQ V  MVD  +A++   R  LLAP++R+RKGE+ + F +LR QGF R +VDG  
Sbjct: 124 GIPLEAQTVSQMVDATLALDPERRYMLLAPVVRERKGEHVQVFEQLRAQGFVRARVDGTV 183

Query: 187 HDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAIL--------E 238
            DLD+ P L  + +H I+VV+DR   +E I+ RLA+SF TAL L DG+ IL         
Sbjct: 184 FDLDAVPPLSLRQKHTIEVVIDRFRPREDIKQRLAESFETALRLGDGLVILADMDAAHGN 243

Query: 239 TAPTEGEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLV 298
                 E      S +++CPV  +++PE+EPRLFSFN+P GACP CDGLGV   FD   V
Sbjct: 244 AGAAAPEAPEQLLSSRYSCPVCDYSLPELEPRLFSFNSPVGACPTCDGLGVTQVFDPARV 303

Query: 299 VPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGE 358
           V    L+LA+GA+  W +  + YF Q I ++A HY FD   PW  LP  VQ+  L GSG+
Sbjct: 304 VSHPELSLASGAVRGWDRRNAHYF-QLILSLAAHYGFDVDAPWNKLPAAVQKAILYGSGK 362

Query: 359 EEITFRY--DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGY 416
           E+I FRY  + GG+V +    FEG++PN+ERRY+ET+S  +REE  +Y +++ C  C G 
Sbjct: 363 EQIAFRYITERGGKVTR-EHPFEGILPNLERRYKETESVAVREELAKYISDQPCPACEGQ 421

Query: 417 RLRPEALAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFL 476
           RL   A  V +A   +  +   SI +A  +   +   L+  + EIA  I+KEIRERL FL
Sbjct: 422 RLNRSARNVFVADHALPALTHRSIDDALAFFDGLK--LTGWRGEIAVKIVKEIRERLSFL 479

Query: 477 NNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTT 536
           N+VGL YLTL R A +LSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL T
Sbjct: 480 NDVGLNYLTLDRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGT 539

Query: 537 LKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGD 596
           L  LRD GNTVIVVEHDE+A+R AD+V DIGPGAGVHGG+VVA GT   ++ +P S+TG 
Sbjct: 540 LTRLRDLGNTVIVVEHDEDAIRMADHVLDIGPGAGVHGGEVVAQGTVQDMLDSPRSVTGQ 599

Query: 597 YLAGRREIPVPATRRK--GNKKKVTVRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTL 654
           +L+G R I VP  RR+   +   + ++ A+GNNL+ + +  P G F CVTGVSG GKSTL
Sbjct: 600 FLSGVRAIEVPKERRQPIDDDSWLHLKGASGNNLKHVDLAIPAGLFTCVTGVSGSGKSTL 659

Query: 655 TIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTP 714
             +TLF+ A++ LNGA   PAP    +GL+  DKV+DIDQ PIGRTPRSNPATYTG FTP
Sbjct: 660 VNDTLFRLAAVELNGASAQPAPYAAAEGLQLFDKVVDIDQSPIGRTPRSNPATYTGLFTP 719

Query: 715 IRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKR 774
           +R+ FA +PEAR+RGY  GRFSFNV+GGRCEAC+GDG++K+EMHFLPDVYV C+ C GKR
Sbjct: 720 LREMFAQVPEARSRGYTAGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDVCHGKR 779

Query: 775 YNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTL 834
           YNRETLE+ +KG +IADVLDMTVEDA + F+ VP+I  K+D L  VGL YIK+GQ ATTL
Sbjct: 780 YNRETLEILYKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTL 839

Query: 835 SGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEH 894
           SGGEAQRVKLSKEL+KR TG TLYILDEPTTGLHF D+ +LL+VLH+LV+QGNTVVVIEH
Sbjct: 840 SGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEH 899

Query: 895 NLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPMLAGAK 948
           NLDVIKTADW++D+GPEGG GGG ++ +GTPE VA    SHTG +L P L  A+
Sbjct: 900 NLDVIKTADWIVDLGPEGGAGGGRILVSGTPETVAATPGSHTGHFLAPHLKPAR 953



 Score =  139 bits (350), Expect = 9e-37
 Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 17/213 (7%)

Query: 410 CGTCGGYRLRPEALAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEI 469
           C  C G R   E L +   G  + +V+ M++ +A      VP                 I
Sbjct: 772 CDVCHGKRYNRETLEILYKGHTIADVLDMTVEDALKLFENVPT----------------I 815

Query: 470 RERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTG-VLYVLDEPSIGLHQR 528
             +L  L  VGL+Y+ L ++A TLSGGE+QR++L+ ++    TG  LY+LDEP+ GLH  
Sbjct: 816 ARKLDTLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFH 875

Query: 529 DNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMA 588
           D ++LL  L  L DQGNTV+V+EH+ + ++ AD++ D+GP  G  GG+++  GTP  + A
Sbjct: 876 DIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWIVDLGPEGGAGGGRILVSGTPETVAA 935

Query: 589 NPASITGDYLAGRREIPVPATRRKGNKKKVTVR 621
            P S TG +LA   +   PA      + K   +
Sbjct: 936 TPGSHTGHFLAPHLKPARPARPDAAKRVKAATK 968