Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 942 a.a., UvrABC system protein A from Methylophilus sp. DMC18

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 570/944 (60%), Positives = 731/944 (77%), Gaps = 8/944 (0%)

Query: 7   IEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66
           I++RGAR HNLK+I++DIPR++LVV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4   IKIRGARTHNLKNINLDIPRNQLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 67  FLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYSPAT 126
           FL  M KPDVD I GLSPAISIEQK+TS NPRSTVGTVTEI+DY+RLL+AR G P  P  
Sbjct: 64  FLARMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARAGDPECPEH 123

Query: 127 GLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVDGAF 186
           G+ +EAQ V  MVD V+ + E T+  +LAP++ +RKGE    F  L+ QGF R+++DG  
Sbjct: 124 GIKLEAQTVSQMVDSVLKLPEDTKLMILAPVVSNRKGEQLDLFDTLKAQGFVRLRIDGKI 183

Query: 187 HDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPTEGEP 246
           +++DS P L K  +H +DVVVDR+ V+E I+ R+A+SF TAL LADG A+     +E E 
Sbjct: 184 YEMDSLPQLAKTTKHSVDVVVDRLKVREDIKQRIAESFETALRLADGKAVALEMDSEKE- 242

Query: 247 ERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLVVPDATLTL 306
             H FS KF+CPV  +++ E+EPRLFSFN P GACP CDGLG   FFD + VV    L+L
Sbjct: 243 --HLFSAKFSCPVCDYSLAELEPRLFSFNNPMGACPKCDGLGQVTFFDPKRVVAFPHLSL 300

Query: 307 ANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGEEEITFRY- 365
           A+GA+  W K ++ ++ Q + ++++HY+FD + P++ LPE+ Q++ L GSG E+I F+Y 
Sbjct: 301 ASGAIKGWDK-RNQFYFQMLASLSQHYDFDLEAPFETLPEETQQILLYGSGREQIAFKYL 359

Query: 366 DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGYRLRPEALAV 425
           +E G  +  S  FEG+I N++RRYRE+DS+ +R+E  +Y N  +C  CGG RLR EA  V
Sbjct: 360 NERGTFFSKSHTFEGIINNLQRRYRESDSTAVRDELAKYINATACPDCGGTRLRKEARHV 419

Query: 426 KIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFLNNVGLEYLT 485
           K+   ++ ++ ++ +++A ++  T+   LS QK  IA  I+KEI  RL FL NVGL+YL+
Sbjct: 420 KVGDRNIHQICEVPLKQALNFFETL--QLSGQKLAIADKIVKEIESRLKFLTNVGLDYLS 477

Query: 486 LSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGN 545
           LSR+A TLSGGE+QRIRLASQIGSGLTGV+YVLDEPSIGLHQRDNDRLL TLK LRD GN
Sbjct: 478 LSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKRLRDIGN 537

Query: 546 TVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGDYLAGRREIP 605
           +VIVVEHD++A++ AD++ DIGPGAG HGG +V+ GTPAQI A+P S+TG Y++G+++I 
Sbjct: 538 SVIVVEHDQDAIQLADFIVDIGPGAGEHGGNIVSFGTPAQIEADPNSLTGQYISGKKQIT 597

Query: 606 VPATRRKGNKKK-VTVRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFKTAS 664
               R + + K+ + +  A+GNNL+D++++ P+G   CVTGVSG GKSTL  +TL++  +
Sbjct: 598 FKLPRTQPDPKRMIKLNGASGNNLKDVSIEIPVGLLTCVTGVSGSGKSTLINDTLYRVVA 657

Query: 665 MRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFAGLPE 724
             L G+   PA  ++I+GLE  DKV+D+DQ PIGRTPRSNPATYTG FTPIRD FA +PE
Sbjct: 658 AHLYGSSTEPAAHQSIEGLEFFDKVVDVDQSPIGRTPRSNPATYTGLFTPIRDLFASVPE 717

Query: 725 ARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKRYNRETLEVTF 784
           +R RGY PGR+SFNVKGGRCEACQGDGVI++EMHFLPDVYV C+ CKG+RYNRETLE+ F
Sbjct: 718 SRARGYGPGRYSFNVKGGRCEACQGDGVIRVEMHFLPDVYVPCDVCKGQRYNRETLEIQF 777

Query: 785 KGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKL 844
           KGK+I +VL MTVE A +FF A P I  K+  L+ VGLGYI +GQ ATTLSGGEAQRVKL
Sbjct: 778 KGKNIHEVLAMTVEQAHQFFNAQPVIERKLKTLLDVGLGYITLGQSATTLSGGEAQRVKL 837

Query: 845 SKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEHNLDVIKTADW 904
           + EL+KR TGRTLYILDEPTTGLHF D++ LL+V+H L + GNTVV+IEHNLDVIKTADW
Sbjct: 838 ALELSKRDTGRTLYILDEPTTGLHFADIQLLLDVIHRLRDAGNTVVIIEHNLDVIKTADW 897

Query: 905 LIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPMLAGAK 948
           LID+GPEGGDGGG +V  GTPE +AE + S+TGRYL P+L   K
Sbjct: 898 LIDMGPEGGDGGGVVVGVGTPETLAENSASYTGRYLIPLLKQLK 941



 Score = 63.2 bits (152), Expect = 8e-14
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 24/228 (10%)

Query: 5   KKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIY-AEGQRRYVESLSAY 63
           + I++ GA  +NLK + ++IP   L  +TG+SGSGKS+L  DT+Y       Y  S    
Sbjct: 609 RMIKLNGASGNNLKDVSIEIPVGLLTCVTGVSGSGKSTLINDTLYRVVAAHLYGSSTEPA 668

Query: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123
           A Q         ++ +      + ++Q    + PRS   T T ++  +R LFA V  P S
Sbjct: 669 AHQ--------SIEGLEFFDKVVDVDQSPIGRTPRSNPATYTGLFTPIRDLFASV--PES 718

Query: 124 PATG-------LPIEAQQVQD-MVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQ 175
            A G         ++  + +    D V+ +E      +  P    +   Y +E LE++ +
Sbjct: 719 RARGYGPGRYSFNVKGGRCEACQGDGVIRVEMHFLPDVYVPCDVCKGQRYNRETLEIQFK 778

Query: 176 G-----FQRVKVDGAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIET 218
           G        + V+ A    ++ P +++K +  +DV +  I + +   T
Sbjct: 779 GKNIHEVLAMTVEQAHQFFNAQPVIERKLKTLLDVGLGYITLGQSATT 826