Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 940 a.a., UvrABC system protein A from Escherichia fergusonii Becca

 Score = 1159 bits (2999), Expect = 0.0
 Identities = 583/944 (61%), Positives = 729/944 (77%), Gaps = 7/944 (0%)

Query: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63
           + KIEVRGAR HNLK+I++ IPRD+L+V+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123
           ARQFL +M+KPDVDHI GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P  
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120

Query: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVD 183
           P   +P+ AQ V  MVD V++  EG R  LLAPII++RKGE+ K    L  QG+ R ++D
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180

Query: 184 GAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPTE 243
           G   DL  PP L+ + +H I+VVVDR  V++ +  RLA+SF TAL+L+ G A++     +
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMD-D 239

Query: 244 GEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLVVPDAT 303
            + E   FS  FACP+ G+++ E+EPRLFSFN P GACP CDGLGV+ +FD   V+ +  
Sbjct: 240 PKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPE 299

Query: 304 LTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGEEEITF 363
           L+LA GA+  W + ++ Y+ Q + ++A HY+FD + PW +L   V +V L GSG+E I F
Sbjct: 300 LSLAGGAIRGWDR-RNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEF 358

Query: 364 RY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGYRLRPEA 422
           +Y ++ G        FEGV+ NMERRY+ET+SS +REE  ++ +NR C +C G RLR EA
Sbjct: 359 KYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREA 418

Query: 423 LAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFLNNVGLE 482
             V +    +  +  MSI  A ++   +   L+ Q+ +IA  ILKEI +RL FL NVGL 
Sbjct: 419 RHVYVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKEIGDRLKFLVNVGLN 476

Query: 483 YLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRD 542
           YLTLSR+A TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL +LRD
Sbjct: 477 YLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRD 536

Query: 543 QGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGDYLAGRR 602
            GNTVIVVEHDE+A+R AD+V DIGPGAGVHGG+VVA G    IMA P S+TG Y++G+R
Sbjct: 537 LGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKR 596

Query: 603 EIPVPATRRKGNKKKVT-VRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFK 661
           +I VP  R   N +KV  +  A GNNL+D+T+  P+G F C+TGVSG GKSTL  +TLF 
Sbjct: 597 KIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFP 656

Query: 662 TASMRLNGAR-QTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFA 720
            A  +LNGA    PAP   I+GLEH DKVIDIDQ PIGRTPRSNPATYTG FTP+R+ FA
Sbjct: 657 IAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA 716

Query: 721 GLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKRYNRETL 780
           G+PE+R RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV C+ CKGKRYNRETL
Sbjct: 717 GVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETL 776

Query: 781 EVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQ 840
           E+ +KGK+I +VLDMT+E+A+EFF AVP++  K+  LM VGL YI++GQ ATTLSGGEAQ
Sbjct: 777 EIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQ 836

Query: 841 RVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEHNLDVIK 900
           RVKL++EL+KR TG+TLYILDEPTTGLHF D+++LL+VLH+L +QGNT+VVIEHNLDVIK
Sbjct: 837 RVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIK 896

Query: 901 TADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPML 944
           TADW++D+GPEGG GGG ++ +GTPE VAE   SHT R+LKPML
Sbjct: 897 TADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940