Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

 Score = 1363 bits (3527), Expect = 0.0
 Identities = 682/974 (70%), Positives = 788/974 (80%), Gaps = 22/974 (2%)

Query: 1   MPELKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESL 60
           M ELK I +RGAREHNLK ID+D+PR++L+V+TGLSGSGKSSLAFDTIYAEGQRRYVESL
Sbjct: 1   MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL 60

Query: 61  SAYARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGT 120
           SAYARQFL+MMQKPDVD I GLSPAISIEQKTTS+NPRSTVGTVTEIYDYMRLLFARVG 
Sbjct: 61  SAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGV 120

Query: 121 PYSPATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRV 180
           PYSPATGLPIE+Q V  MVDR++A EEGTR Y+LAPI+R RKGEY+KE  EL K+GFQRV
Sbjct: 121 PYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRV 180

Query: 181 KVDGAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETA 240
           KVDG F+++   P LDKK++HDIDVVVDR VV+  +  RLADS  T L LADG+AI E A
Sbjct: 181 KVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA 240

Query: 241 PTEGEPE-----------------RHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPA 283
                PE                 R  FSEKFACPVSGFTIPEIEPRLFSFN PFGACP+
Sbjct: 241 DKPLPPEDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPS 300

Query: 284 CDGLGVELFFDERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKA 343
           CDGLG +   DE L+VP+   TL +GA+APW K  SPY+ QT+ A+ K + F   + W  
Sbjct: 301 CDGLGSQQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTD 360

Query: 344 LPEKVQEVFLRGSGEEEITFRYDEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFER 403
           L ++ Q   L+G+ +++I F Y +G R Y+  + FEG++PN+ERR++ETDS+W REE ER
Sbjct: 361 LSKEAQHAILQGT-DDKIEFNYQDGARSYKTVKNFEGIVPNLERRWKETDSAWAREEIER 419

Query: 404 YQNNRSCGTCGGYRLRPEALAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIAR 463
           Y +   C  C GYRL+PEALAVKI  LH+GEV QMSIR+A DW   +PE+L+ ++NEIA 
Sbjct: 420 YMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAV 479

Query: 464 AILKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSI 523
            ILKEIRERL FLN+VGL+YL+LSRN+GTLSGGESQRIRLASQIGSGLTGVLYVLDEPSI
Sbjct: 480 RILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSI 539

Query: 524 GLHQRDNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTP 583
           GLHQRDN RLL TLK+LRD GNTVIVVEHDE+A+  ADYV DIGP AG+HGGQV+A GTP
Sbjct: 540 GLHQRDNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTP 599

Query: 584 AQIMANPASITGDYLAGRREIPVPATRRKGNK-KKVTVRKATGNNLQDLTVDFPLGKFVC 642
             +MANP S+TG YL+G   + VPA RRK  K +++ V  A GNNLQ++T   PLG F  
Sbjct: 600 QDVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTA 659

Query: 643 VTGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPR 702
           VTGVSGGGKST  IETL+K+A+ R+ GAR+ PA  + I G E +DKVIDIDQ PIGRTPR
Sbjct: 660 VTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPR 719

Query: 703 SNPATYTGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPD 762
           SNPATYTGAFTPIRDWFAGLPEA+ RGY PGRFSFNVKGGRCEACQGDGVIKIEMHFLPD
Sbjct: 720 SNPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPD 779

Query: 763 VYVECETCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGL 822
           VYV C+ C GKRYNRETL+VTFKGKSIADVLDMTVE+  EFF AVP++R+K+ +L  VGL
Sbjct: 780 VYVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGL 839

Query: 823 GYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHEL 882
           GYIKVGQQA TLSGGEAQRVKL+KEL+KRSTGRTLYILDEPTTGLHF DV KLLE+LH L
Sbjct: 840 GYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHAL 899

Query: 883 VEQGNTVVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKP 942
           VEQGN+VVVIEHNL+VIKTADW+IDIGPEGG GGG +VATGTPE + +V  S+TG +LK 
Sbjct: 900 VEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKE 959

Query: 943 ML---AGAKRVAAE 953
           +L      KR AAE
Sbjct: 960 LLDRRPAGKREAAE 973