Pairwise Alignments

Query, 810 a.a., Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) from Dinoroseobacter shibae DFL-12

Subject, 1395 a.a., nitrite reductase large subunit NirB from Pectobacterium carotovorum WPP14

 Score =  506 bits (1303), Expect = e-147
 Identities = 310/777 (39%), Positives = 431/777 (55%), Gaps = 24/777 (3%)

Query: 2    KQELVIIGAGMASGRVIEHLLKED-PDAFEITLFNAEPRGNYNRIMLSPVLSGDKSYADI 60
            K  LV++G GM     +E L++ D    + I +F  E    Y+R+ LS   SG +S A +
Sbjct: 419  KPILVVVGHGMVGHYFLEQLVERDLHQHYHIVVFGEERHEAYDRVHLSEYFSG-RSAASL 477

Query: 61   ITHTDDWYEQNGITCRFGEHVVRIDRETGTVVGQRGA-LPYDKLLIATGSAPFIIPVEGK 119
                D ++ ++GI  R    +V IDRE   V   +G    YDKL++ATGS  F+ P+ G 
Sbjct: 478  SLVKDGFFAESGIELRSASEIVAIDRERQCVCDAQGRETAYDKLVLATGSYAFVPPIPGN 537

Query: 120  DLPGVITYRDLDDTNAMIEAAASGGKAVVIGGGLLGLEAAAGLKERGMDVTVLHLMGHLM 179
              PG + YR LDD +A+   A  G   VVIGGGLLGLEAA  L++ G+D  V+     LM
Sbjct: 538  TRPGCLVYRTLDDLDAIAAQAKKGKSGVVIGGGLLGLEAANALRQLGLDTHVVEFAPRLM 597

Query: 180  ERQLDESAGFLLRRDLEKRGIKVKCRASTAAIL-GETRVEGVLLEDNEGLEADLVVMAVG 238
              QLD+    +LRR +E  G+++     T  I  GE  +  +   D   LE DLV+ + G
Sbjct: 598  AVQLDDGGATMLRRKIEALGVQIHLSKETREITDGEQALHRLCFADGSILETDLVLFSAG 657

Query: 239  IRPETRLATDAGLDVAR--GITVDAELRTSDPDIHAVGECVEFDGQLFGLVAPLYDQARV 296
            IRP  +LA    L+     GI +D   +TSD  I A+GEC  + GQ+FGLVAP Y  AR 
Sbjct: 658  IRPRDKLADSCDLEKGPRGGIVIDDSCQTSDDAIFAIGECALWKGQIFGLVAPGYQMARS 717

Query: 297  VADSLLGRSAAFTPKELSTKLKVTGCDLFSAGDFADG--AGREDIVFRDPSRGVYKRLVL 354
            VAD+L  R   FT  ++STKLK+ G ++ S GD A G  AG +   + D    VYK++V+
Sbjct: 718  VADTLAQRDTPFTGADMSTKLKLLGVEVASIGD-AHGRTAGSQSYQWTDGPNEVYKKIVV 776

Query: 355  EEN--RLVGAVFYGDTRDSNWFFGLIQSGEDISEMRDTLIFGPAYQGGAALDPMAAVAAL 412
              +  RL+GAV  GD+ D +    ++ +   + +  + LI  PA  G A       VAAL
Sbjct: 777  SADGKRLLGAVLIGDSSDYSTLLQMMLNDMPLPKQPEGLIL-PARSGDAPKG--LGVAAL 833

Query: 413  PLDAEICGCNGVSKGDIVAAIEGGATDLGTVRSLTKASSSCGTCTGLVEQVLGVTLGDDF 472
            P  A+IC C+ VSKGDI AA+ GG  +LG +++ TKA + CG C  L++QV+   L    
Sbjct: 834  PASAQICSCHNVSKGDISAAVAGGCGELGALKTCTKAGTGCGGCVPLLKQVMEYEL-TQL 892

Query: 473  VIPAAASICGCTDLSHEDVRRMIKSRELKSMAAVWQELGWKTSCGCHVCRPALNFYLLAD 532
             +     IC     S +++  +I+  E++S  ++ +  G     GC VC+P +   L + 
Sbjct: 893  GVEVKKDICEHFAYSRQELYHLIRVHEIRSFDSLLERYGH--GLGCEVCKPLVGSMLASC 950

Query: 533  WPLEYRDDPQS---RFINERKHANIQKDGTYSVVPRMWGGMTTPDELRAIADAAEKYNVP 589
            W  +Y   PQ    +  N+R  ANIQKDGTYSVVPR+  G  TP+ L AI   A++YN+ 
Sbjct: 951  WN-DYLLQPQHLPLQDTNDRFFANIQKDGTYSVVPRVPAGEITPEGLIAIGQVAQRYNLY 1009

Query: 590  TVHVTGGQRIDLLGVRGEDLPAIWADLNAAGMVSGHAYAKGLRTVKTCVGKDHCRFGTQD 649
            T  +TGGQR+DL G R E LP IW +L  AG  +GHAY K LRTVK+CVG   CR+G QD
Sbjct: 1010 T-KITGGQRVDLFGARLEQLPEIWRELIDAGFETGHAYGKSLRTVKSCVGSTWCRYGVQD 1068

Query: 650  STGLGIALEKRLWGSWTPHKVKLAVSGCPRNCAEATCKDIGVVCVDSGYQIGVAGAAGMD 709
            STGL I LE R  G  +PHKVK+AVSGC R CAEA  KDIGV+  D G+ + V G  GM 
Sbjct: 1069 STGLAIQLEHRYKGLRSPHKVKMAVSGCTRECAEAQSKDIGVIATDKGWNLYVCGNGGMK 1128

Query: 710  VKETERLADVATEQEALDLITAFFQLYRENAKYLDRPYKWVAKV--GLDWVKDQVFD 764
             +  +  A     +  L  I      Y      L R   W+  +  G+D+++  + +
Sbjct: 1129 PRHADLFASDLDTETLLRTIDRVLMFYIRTGDRLQRTSTWMDNLEGGIDYLRQVILE 1185



 Score =  280 bits (716), Expect = 4e-79
 Identities = 167/401 (41%), Positives = 230/401 (57%), Gaps = 9/401 (2%)

Query: 1   MKQELVIIGAGMASGRVIEHLLKEDPDAFEITLFNAEPRGNYNRIMLSPVLSGDKSYADI 60
           MK  L++IG GMAS R ++ L +     + IT+   EPR +YNRI+LSPVLSG+K++ D 
Sbjct: 1   MKPHLIVIGNGMASARFVDVLRQLAATRYRITVIGDEPRASYNRILLSPVLSGEKAFTDT 60

Query: 61  ITHTDDWYEQNGITCRF--GEHVVRIDRETGTVVGQRGALPYDKLLIATGSAPFIIPVEG 118
           +       +   +   +  GE V  IDR+   V   +  L YD L++ATGS PF+ P+ G
Sbjct: 61  LLTPATLDDDAALPVNYLLGERVTHIDRQQREVTTTQRQLHYDHLVLATGSTPFMPPMPG 120

Query: 119 KDLPGVITYRDLDDTNAMIEAAASGGKAVVIGGGLLGLEAAAGLKERGMDVTVLHLMGHL 178
            DL GV  +R LDD   M+        AVVIGGGLLG+EAAA LK RG DVT+LH +  L
Sbjct: 121 IDLAGVCGFRTLDDVELMLTTIGQSVPAVVIGGGLLGIEAAAALKLRGADVTLLHRVPVL 180

Query: 179 MERQLDESAGFLLRRDLEKRGIKVKCRASTAAILGETR-VEGVLLEDNEGLEADLVVMAV 237
           MERQLD +A  LL   L +RGI  +      A+ G+ R V  V L D   +   LVV+  
Sbjct: 181 MERQLDATASDLLCNSLRERGIACETDVQVVALHGDERGVTAVALADGRTIPTGLVVVTA 240

Query: 238 GIRPETRLATDAGLDVARGITVDAELRTSDPDIHAVGECVEFDGQLFGLVAPLYDQARVV 297
           G+ P ++LA + GL   RG+ VD +L+T+DP I A+GEC E +G++FGLVAP +  A +V
Sbjct: 241 GVIPASQLARECGLPCNRGVLVDGQLQTADPYISAIGECCELNGEIFGLVAPCFAHATLV 300

Query: 298 ADSLLGRSAA-FTPKELSTKLKVTGCDLFSAGDFADGAGREDIVFRDPSRGVYKRLVLEE 356
           A  L G +   +  ++ +T+LKVTG  + S GD       E     DP    Y+RL++ +
Sbjct: 301 AQRLAGHTPKDYQREQAATRLKVTGIGVVSGGDINVTPDDEVYTLFDPQTQHYRRLLVRD 360

Query: 357 NRLVGAVFYGDTRDSNWFFGLIQS---GEDISEMRDTLIFG 394
            RL G + YGDT DS      + S   GE I     +L+FG
Sbjct: 361 GRLSGVLLYGDTDDSQRLLATMDSTTEGEMIPPA--SLLFG 399