Pairwise Alignments

Query, 333 a.a., putative TIM-barrel protein, nifR3 family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 290 a.a., tRNA dihydrouridine synthase DusB from Escherichia coli ECRC98

 Score =  203 bits (517), Expect = 4e-57
 Identities = 118/257 (45%), Positives = 152/257 (59%), Gaps = 2/257 (0%)

Query: 35  GAGLVVSEMVASQEMVQAKASVRARAELGFGAQATAVQLAGREAYWMGEAARYVADQGAR 94
           GAGL VSEM++S   V      R R           VQ+AG +   M +AAR   + GA+
Sbjct: 2   GAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQ 61

Query: 95  VIDINMGCPAKKVVNGASGSALMRDLDHALTLIDAVVAAVDVPVTLKTRLGWDDDCLNAP 154
           +IDINMGCPAKKV    +GSAL++  D   +++  VV AVDVPVTLK R GW  +  N  
Sbjct: 62  IIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCE 121

Query: 155 DLARRAEAAGIAMVTIHGRTRCQFYKGAADWTAIGRVKRAVSIPVIANGDIVDTAAAAQA 214
           ++A+ AE  GI  +TIHGRTR   + G A++ +I  VK+ VSIPVIANGDI D   A   
Sbjct: 122 EIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAV 181

Query: 215 RAASGADGLMVGRGAQGRPWRLAEIAAAL-YGAPAPDIPSGDALVDLVLAHFEAMLAFYG 273
              +GAD LM+GR AQGRPW   EI   L  G   P +P  + +  L+ AH   +  FYG
Sbjct: 182 LDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAE-VKRLLCAHVRELHDFYG 240

Query: 274 PELGLRTARKHLGWYME 290
           P  G R ARKH+ WY++
Sbjct: 241 PAKGYRIARKHVSWYLQ 257