Pairwise Alignments

Query, 333 a.a., putative TIM-barrel protein, nifR3 family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 335 a.a., tRNA-dihydrouridine synthase from Caulobacter crescentus NA1000 Δfur

 Score =  301 bits (771), Expect = 2e-86
 Identities = 159/305 (52%), Positives = 199/305 (65%), Gaps = 4/305 (1%)

Query: 14  VLLAPMAGITDLPFRNVVSRFGAGLVVSEMVASQEMVQAKASVRARAELGFGAQATAVQL 73
           V +APM G++DLPFR   S  GA  V +EMVAS E  + +  V  RA +G G   T +QL
Sbjct: 16  VWIAPMTGVSDLPFRETASALGAPYVATEMVASAEFAKGRPDVVRRAAVGEGLPLTVIQL 75

Query: 74  AGREAYWMGEAARYVADQGARVIDINMGCPAKKVVNGAS-GSALMRDLDHALTLIDAVVA 132
            GR+  +M + AR   + GA +ID+N GCPAK+V  GA+ GSALMR+ D A  L+ A V 
Sbjct: 76  VGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAEALVAAAVE 135

Query: 133 AVDVPVTLKTRLGWDDDCLNAPDLARRAEAAGIAMVTIHGRTRCQFYKGAADWTAIGRVK 192
           AVDVPVT+K RLGWD DCLNAPD+ARRAEAAG   VT+HGRTR QFYKG ADWTA+  VK
Sbjct: 136 AVDVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKGVADWTAVAAVK 195

Query: 193 RAVSIPVIANGDIVDTAAAAQARAASGADGLMVGRGAQGRPWRLAEIAAALYGAPAPDIP 252
           +AVS+PV+ NGDIVD   A QA   SGADG+M+GRG  GRPW    I AAL G    + P
Sbjct: 196 QAVSVPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRPWIAGAIEAALEGRGFQE-P 254

Query: 253 SGDALVDLVLAHFEAMLAFYGPELGLRTARKHLGWYMEAR--PDGFSPPKSLRRAILTAT 310
             +  + + + HF   L+FYG  LGL+  RKHL  Y+EA   P+     ++ R ++    
Sbjct: 255 EAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAPWPETAEARRAARASLCRLE 314

Query: 311 DPATV 315
           DPA V
Sbjct: 315 DPAAV 319