Pairwise Alignments

Query, 333 a.a., permease protein of ABC transporter (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

 Score =  215 bits (547), Expect = 1e-60
 Identities = 133/327 (40%), Positives = 184/327 (56%), Gaps = 13/327 (3%)

Query: 1   MTRTTTSLLAIALV---CGASAASAENAKVVFGTNWLAQAEHGGFYQSVADGTYAACGLD 57
           + R   SLLA AL+      +  +    KVV  T+W AQAE GGFYQ++ADG Y   GLD
Sbjct: 8   LARPLRSLLAAALLPTTLTIAPLAIAGDKVVLLTSWYAQAEQGGFYQALADGLYEKEGLD 67

Query: 58  VEIISGGPQVNNRALMLAGRIDYHMGGDMLQAFNAVKEDIPVVMVAATFQKHPQVILAHP 117
           V I  GGPQVN   L+++ + D+ +  D LQ   +V++ +PVV VAA FQ  PQ ++ H 
Sbjct: 68  VSIRMGGPQVNGMQLLVSKQADFIVNYD-LQILKSVEQGLPVVAVAAPFQGDPQGLMTH- 125

Query: 118 GEADSWEELKDLTLLIGDNGFTSYYQWMIAEHGFTVEQRQPYTFNPAPFIADKRVGMQGY 177
            +    + L    +L+  +G  +++ W+  ++     Q +PYTFN  PF+AD +   Q Y
Sbjct: 126 ADVSGLDALGGKPVLVSTSGQQTWWPWLKGKYQLADNQARPYTFNLQPFLADPQTTQQAY 185

Query: 178 LSSEPFAVEKEAGFKPNVFLIADAGFSSYATMVETMQATIDEKPEQVKCFVEGSIKGWYN 237
            SSE F   K AG  PN FL ADAG+  Y + V T Q  I E PE+V  FV  S++GW  
Sbjct: 186 ASSELFQAIK-AGVTPNFFLFADAGYPPYGSTVVTRQDIIAEHPERVAGFVRASMEGWKR 244

Query: 238 YLYGDPSAANELIKAANPDMTDDKLAFARNMMKDEGIVDSGDALEMGIGAINP---DVVA 294
           YL  DPSA N LIK  NP+MTD+ LA+  + +K   +V  G+A   GIG +         
Sbjct: 245 YL-DDPSAGNALIKRDNPNMTDELLAWGVSTLKQYRLVTGGEAATQGIGTMTDSRWQATR 303

Query: 295 DFYAKMVKAGVIEDGLDIAASYTTQFV 321
           DF   MV+AG++        +YTT+FV
Sbjct: 304 DF---MVEAGLLGPDAPWRNAYTTRFV 327