Pairwise Alignments

Query, 333 a.a., permease protein of ABC transporter (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 332 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  244 bits (623), Expect = 2e-69
 Identities = 131/307 (42%), Positives = 188/307 (61%), Gaps = 3/307 (0%)

Query: 1   MTRTTTSLLAIALVCGASAASAENAKVVFGTNWLAQAEHGGFYQSVADGTYAACGLDVEI 60
           +TR   +L   AL   +  A+    K  F TNW AQAEHGG+YQ++A G Y   GLDV I
Sbjct: 7   LTRLCRALGVTALGVLSLGAAQAQEKFTFMTNWYAQAEHGGYYQAIATGIYKKYGLDVTI 66

Query: 61  ISGGPQVNNRALMLAGRIDYHMGGDMLQAFNAVKEDIPVVMVAATFQKHPQVILAHPGEA 120
             GGPQ+N   +M AG+ D  MG    Q   A    +P+V VAA FQK PQV++AH  + 
Sbjct: 67  KMGGPQINIIQIMAAGQADCIMGATDTQMMVARGNGLPIVNVAAIFQKDPQVLIAHE-DV 125

Query: 121 DSWEELKDLTLLIGDNGFTSYYQWMIAEHGFTVEQRQPYTFNPAPFIADKRVGMQGYLSS 180
            S+E++K  T+LI        + W+  ++G+T  Q +PYT+N  PF+ADK +   G+LSS
Sbjct: 126 KSFEDMKGKTILIAPTAMRGMWSWLKGKYGYTDAQARPYTYNIQPFVADKNIVQMGFLSS 185

Query: 181 EPFAVEKEAGFKPNVFLIADAGFSSYATMVETMQATIDEKPEQVKCFVEGSIKGWYNYLY 240
           EPFA++K AG K N FL+AD G+  YA +V  M  T+ E+ + V  FV+ + +G+ +YL 
Sbjct: 186 EPFAIQK-AGVKANTFLLADQGYPPYANLVSCMDKTVKEREKTVAAFVKATAEGYKSYL- 243

Query: 241 GDPSAANELIKAANPDMTDDKLAFARNMMKDEGIVDSGDALEMGIGAINPDVVADFYAKM 300
            DP+ AN LIK  NP+MTDD+L +    +K+ GI+ SGDA + GIG I  + +   +A +
Sbjct: 244 ADPAPANALIKKDNPNMTDDQLNYGITKLKEMGIITSGDAAKQGIGIITRERLLKTHAFL 303

Query: 301 VKAGVIE 307
           V+  +I+
Sbjct: 304 VENEMID 310