Pairwise Alignments

Query, 333 a.a., permease protein of ABC transporter (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 333 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  213 bits (541), Expect = 7e-60
 Identities = 120/319 (37%), Positives = 188/319 (58%), Gaps = 7/319 (2%)

Query: 9   LAIALVCGASAASAENAKVVFGTN----WLAQAEHGGFYQSVADGTYAACGLDVEIISGG 64
           LA  LV  AS A+  +A+ +   N    + A AEHGG+Y ++A+G Y   GL+V++   G
Sbjct: 14  LATCLVLLASVAAPTHAQALRDVNVALSFYASAEHGGYYAALAEGIYEKHGLNVKVTQVG 73

Query: 65  PQVNNRALMLAGRIDYHMGGDMLQAFNAVKEDIPVVMVAATFQKHPQVILAHPGEADSWE 124
           PQ NN  LM++GR+D+  G  M +A NAV+EDIP+V VAA FQ+ PQ ++ H G     E
Sbjct: 74  PQGNNMQLMVSGRMDFVNGWSM-RALNAVREDIPLVSVAAVFQRDPQCLVHHQGAYAKLE 132

Query: 125 ELKDLTLLIGDNGFTSYYQWMIAEHGFTVEQRQPYTFNPAPFIADKRVGMQGYLSSEPFA 184
            +K   + +      S++ W+ A +GF   Q +P+  + A  + D ++  QGY++++ F 
Sbjct: 133 NMKGAPIRVAQLARGSFWPWLKARYGFDDSQLRPFDMSYAALLQDPKMVQQGYITNDGFQ 192

Query: 185 VEKEAGFKPNVFLIADAGFSSYATMVETMQATIDEKPEQVKCFVEGSIKGWYNYLYGDPS 244
            +++     +  L+AD G+S+Y   ++T Q  I E P+ V  FV+ +++GW  +L  DP+
Sbjct: 193 FKRQ-NLAMDCMLLADYGWSTYMYTIDTTQRLIKENPKLVGDFVKATVEGWRAFL-KDPA 250

Query: 245 AANELIKAANPDMTDDKLAFARNMMKDEGIVDSGDALEMGIGAINPDVVADFYAKMVKAG 304
            A+ LIKA NP MTD+++A+A   MK  G+V+SGDA    IG ++      FY +MV A 
Sbjct: 251 PASRLIKANNPQMTDEQIAYAMAQMKQYGLVESGDAAGGRIGTMSEARWTAFYQEMVTAK 310

Query: 305 VIEDGLDIAASYTTQFVNQ 323
            +  GLD   +Y  QF+ Q
Sbjct: 311 ALPAGLDPRKAYDLQFIKQ 329