Pairwise Alignments

Query, 333 a.a., permease protein of ABC transporter (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 344 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 22/325 (6%)

Query: 18  SAASAENAKVVFGTNWLAQAEHGGFYQSVADGTYAACGLDVEIISGGPQVNNRALMLAGR 77
           +AA A    +    +WL   ++     + A G +A  G+ V  I GGP  N    +  G+
Sbjct: 22  AAAQAPTEDIRIALSWLRNGQYAALMVADAKGYFAEEGIKVSFIDGGPGKNPIPTVGVGQ 81

Query: 78  IDYH-MGGDMLQAFNAVKEDIPVVMVAATFQKHPQVI--LAHPGEAD-SWEELKDLTLLI 133
             +  M    + +       + VV + A  Q+ P V   L +PG+ + + ++L+   + I
Sbjct: 82  AQFGVMAHSFIMSARLAPSPVDVVAIGALIQELPYVYIGLGNPGDPEPTPKDLEGKRVGI 141

Query: 134 GDNGFTSYYQWMIAEHGFTVEQRQPYTF--NPAPFIADKRVGMQGYLSSEPFAVEKEA-- 189
             +G   + + +   +   + + +  T   N  P +  K     G+L ++ + VE EA  
Sbjct: 142 QADG-EMFLKALAKRNNLDLSKIKVETVLANAEPLLVGKVDYFTGHLHNQTYQVELEAAK 200

Query: 190 --------GFKPNVFLIADAGFSSYATMVETMQATIDEKPEQVKCFVEGSIKGWYNYLYG 241
                   G    V   +  G +SY   + T    I EKPE V+  V    KG   +   
Sbjct: 201 ADAPAHLKGKTWKVVRFSKYGVASYGDTLFTSGKMIKEKPETVRKVVRAVAKG-LKFTID 259

Query: 242 DPSAANELIKAANPDM-TDDKLAFARNMMKDEGIVDSGDALEMGIGAINPDVVADFYAKM 300
            P+ A +L+ A    +   DKLA+   M     +  S D    G+  ++P V  D  A  
Sbjct: 260 HPAEAVKLVDAYPQQIERADKLAW--RMKVQNPLNQSADTKARGLLWMDPKVWDDTMAFY 317

Query: 301 VKAGVIEDGLDIAASYTTQFVNQGL 325
            +   I+     A   T  F N G+
Sbjct: 318 KEYDQIKSVAPAAEMMTNAF-NPGI 341