Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  325 bits (832), Expect = 3e-93
 Identities = 189/440 (42%), Positives = 260/440 (59%), Gaps = 31/440 (7%)

Query: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
           F  L L P +L+A++E GY  PTPIQ +AIP  LEGRD++  AQTGTGKTA FTLP++  
Sbjct: 3   FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62

Query: 64  L--RKGRARARMP-RSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLI 120
           L  R+  A+ R P R+L+L PTRELAAQ+ EN   Y+K+  +   ++ GGVS   Q + +
Sbjct: 63  LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122

Query: 121 DKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQ 180
             GVDVL+ATPGRLLD   +  + L  V+++V+DEADRMLDMGFI DI ++    P  RQ
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQ 182

Query: 181 TLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKR 240
            L FSAT + +I+ +    L NP  +EVAR++T S+ +TQ  V F   +R        KR
Sbjct: 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQH-VHFVDKKR--------KR 233

Query: 241 EMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQF 300
           E+L  +I +     +  ++F   K   + +A+ L K G  +A IHG+  Q  RT+ L  F
Sbjct: 234 ELLSHMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291

Query: 301 RDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVP 360
           + G ++ LVA+D+AARGLDI  + HV N+++P+  EDYVHRIGRTGRA   G  L L   
Sbjct: 292 KSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV 351

Query: 361 ADDKLLAAIEDLVKLEIPRIEAPGIS--------------APQGGRSKDEERPEPEKRER 406
            + KLL  IE L+K EIPRI  PG                  +GG  + +     +++ R
Sbjct: 352 DEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPR 411

Query: 407 RSRRRTKPEPAKANAPAQAP 426
           R     K   AK   PA+ P
Sbjct: 412 RGEGGAKSASAK---PAEKP 428