Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  333 bits (853), Expect = 1e-95
 Identities = 195/471 (41%), Positives = 281/471 (59%), Gaps = 25/471 (5%)

Query: 1   MTKFSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
           +T F++L L  K++ ++++ GY TPTPIQA+AIP  LEGRD++G+AQTGTGKTA+F LP+
Sbjct: 13  LTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI 72

Query: 61  ITMLRK--GRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDL 118
           I ML K   R   R  R+L+LAPTREL  Q+ +N   + K T L    ++GG S  +Q L
Sbjct: 73  IEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQL 132

Query: 119 LIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFT 178
            ++KG D+L+ATPGRLLD   R  + L+ V  +V+DEAD+MLD+GFI D+ KI ++ P  
Sbjct: 133 QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPK 192

Query: 179 RQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKE 238
           RQTL FSATM   I  + + FL++P +VEV      ++ + Q  V F   + D       
Sbjct: 193 RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQ-YVHFVAGKND------- 244

Query: 239 KREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLD 298
           K ++L+  +    DG   +I+F   K   + + K L   G+  A IHG+  Q QR + L 
Sbjct: 245 KTDLLKKSLNENPDG--RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALK 302

Query: 299 QFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLA 358
            F+DG +K LVA+DVAARG+DIP V+HVFN+D+P   + YVHRIGRT RAGR G  +   
Sbjct: 303 GFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFC 362

Query: 359 VPADDKLLAAIEDLVKLEIPRI--EAP-GISAP------QGGRSKDEERPEPEKRERRSR 409
            P + +LL  IE L+K++IP    E P G+++P      +GGR+ +  +P   +     R
Sbjct: 363 APDETRLLHDIEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPR--EGGR 420

Query: 410 RRTKPEPAKANAPAQAPVAAQAETAVAEAEEAPIPDAVLPAA-RKTETPQR 459
              +  P++ +AP  A    +  +     ++A   DA  PA  RK   P R
Sbjct: 421 HNGESRPSRNHAPRDADNDLEVTSDFKRVKQAE-GDAGRPAGPRKQRRPAR 470