Pairwise Alignments

Query, 383 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 428 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  177 bits (448), Expect = 6e-49
 Identities = 123/387 (31%), Positives = 208/387 (53%), Gaps = 56/387 (14%)

Query: 25  VPIGGDAPIAVQTMTNTLTTDIPGTIAQVQAAADAGADIVRVSVPDVDSSRALKEIVRES 84
           V +GGDAP+ VQ+MTNT T D  GT  QV+  A AG+++VR++V + ++++A+  I  + 
Sbjct: 38  VTVGGDAPVRVQSMTNTDTADAVGTAIQVKELALAGSELVRITVNNDEAAKAVPYIREQL 97

Query: 85  P-----VPIVADIHFHYKRGIEAAEAGAACL---RINPGNIG----DEKRVKEVIKAARD 132
                 VP++ D H++  R +    A A  L   RINPGN+G     +++  ++++ A  
Sbjct: 98  DRMGINVPLIGDFHYNGHRLLTDHPACAEALSKYRINPGNVGRGDKGDRQFAQMVEIAAR 157

Query: 133 NNCSMRIGVNAGSLEKHLLDKYAEPCP-------------EAMVESALDHIKILQDNDFH 179
            + ++RIGVN GSL++ LL +  +                EA++ SAL+  +  ++   +
Sbjct: 158 YDKAIRIGVNWGSLDQDLLARLMDENANRSTPWEARQVMYEALITSALESARKAEEIGLN 217

Query: 180 --EFKISCKASDVFLSAAAYQALADATDAPLHLGITEAGGLMSGTIKSAIGLGNLLWMGI 237
                +SCK S V    A YQALA   D  LHLG+TEAG    G + SA  L  LL  GI
Sbjct: 218 GNNIVLSCKVSGVQDLIAVYQALAQRCDYALHLGLTEAGMGTKGAVASAAALSVLLQQGI 277

Query: 238 GDTIRVSLSADP----VEEIKVGYDILKSLGLRHRGVNVISCPSCARQGFDVIKTVEALE 293
           GDTIRVSL+  P     +E+ +  +IL++LG+R    +V +CP C R      +  E  +
Sbjct: 278 GDTIRVSLTPQPGEARTQEVVIALEILQALGMRAFVPSVTACPGCGRTTSTTFQ--ELAK 335

Query: 294 QRLEHIKTPM-------------SLSIIGCVVNGPGEALMTDVGFTGGGAG---SGMVYL 337
           Q  ++++  M              ++++GC+VNGPGE+   D+G +  G G   +  +++
Sbjct: 336 QIDDYLRGSMPVWRARYPGVENLKVAVMGCIVNGPGESKHADIGISLPGTGEAPAAPIFI 395

Query: 338 AGKQSHKMSN-------EQMIDHIVEQ 357
            G+++  +         +Q++++ +E+
Sbjct: 396 DGQKAMTLRGDGIAREFQQIVENYIEK 422