Pairwise Alignments

Query, 807 a.a., DNA damage response helicase, ligase-associated (from data) from Dinoroseobacter shibae DFL-12

Subject, 867 a.a., ATP-dependent RNA helicase SrmB from Xanthobacter sp. DMC5

 Score =  776 bits (2003), Expect = 0.0
 Identities = 424/866 (48%), Positives = 555/866 (64%), Gaps = 64/866 (7%)

Query: 1   MPAAPPPSLPNEITRWIAAQGWALHPHQREMLARSQDP-ALLLIAPTGGGKTLAGFLPTL 59
           MP A   +LP     W  A+GWA   HQ ++++ ++   ++LLIAPTG GKTLAGFLPTL
Sbjct: 1   MPKAAS-ALPEPFAGWFRARGWAPRAHQLDLISAAESGHSVLLIAPTGAGKTLAGFLPTL 59

Query: 60  AELG--------PAPPP--------------------------GLHTLYISPLKALAADI 85
            EL         PA PP                           LHTLYISPLKALA DI
Sbjct: 60  IELSRPQKNARKPAAPPVAEAGDTATGEAAVPFARWQAERPASPLHTLYISPLKALAVDI 119

Query: 86  KRNLRRPIEEAGLAIRVEDRTGDTSQTQRKRQRADPPHILLTTPESLALMLSYEDAARTF 145
            RNL  P+EE GL IRVE RTGDT  ++R+RQR DPPHILLTTPE ++L+L+ +DA   F
Sbjct: 120 ARNLEAPVEEMGLPIRVETRTGDTPASRRQRQRRDPPHILLTTPEQISLLLASKDAEHLF 179

Query: 146 AGVQRVIVDEIHALAESKRGDQLMLGLARLQSLVPGLRRVGLSATVEDPPAIARFL---- 201
           +G++RV++DE+HAL  SKRGD L L LARL+++ PGL+ VGLSATV +P  + R+L    
Sbjct: 180 SGLKRVVLDELHALVTSKRGDLLSLALARLRAIAPGLQCVGLSATVAEPDDLRRYLVPQD 239

Query: 202 --ARHPDPCDILLADPGPAPDITMLQTDEAPPWSGGGGRYAIPAILQAVKAHKTTLIFHN 259
             A  P   D+++A  G APDI+ML++    PW+    ++A   I + + A+K +L+F N
Sbjct: 240 EDAAEPALADLVIAAGGAAPDISMLESRARMPWASHTAQHAFAEIYELIGANKLSLVFVN 299

Query: 260 TRAQAELFFHALWLANEDALPIGIHHGSLSREQRQRVEAAMAEGALRAIVCTGSLDLGID 319
           TR QAE  F  LW  N+   PI +HHGSL+ EQR+RVEAAMA G L+A+V T SLDLGID
Sbjct: 300 TRWQAEFLFQELWRINDLNYPIALHHGSLAVEQRRRVEAAMAAGKLKAVVATSSLDLGID 359

Query: 320 WGDVDLVIQVGAPKNVKRLVQRIGRANHRYNAPSKALLVPANRFEVVECHAALKTMADGK 379
           WGDVDLVI VGAPK   RL+QRIGRANHR + PS+A+L+PANRFEV+EC AAL+ +  G 
Sbjct: 360 WGDVDLVINVGAPKGASRLMQRIGRANHRLDEPSRAVLIPANRFEVLECRAALEAVKAGA 419

Query: 380 LDGEPRAEGPRDVLCQHILAVAAAGPFDADALFAEVTSAGAYRDLTRPAFDDCLEFCATG 439
            D  P  +G  DVL QHIL +A A PF ADAL+ EV SA  YR L+R  FD  L+F ATG
Sbjct: 420 QDTPPERQGAFDVLAQHILGMACAAPFSADALYGEVRSAAPYRALSRADFDAALDFVATG 479

Query: 440 GYALRAYDRWQRLLHRPDGMWQLRDPRAARQIRMNIGTIIDTETLKVRLKNRR------- 492
           GYALRAY+R+ ++    DG+W++ +P  A+  R+N+GTI++   LKVRL + R       
Sbjct: 480 GYALRAYERYAKIRRTKDGLWRVANPMIAQAYRLNVGTIVEASMLKVRLVSARGAAKTGV 539

Query: 493 ------GGTPLGEVEEGFAATLTPGDTFLIGGQIVRYEGLNELTVEVTRRADKQPKIATF 546
                 GG  LGEVEE F  TL PGDTF+  G+I+RYE L E  V V+R    +PK+  +
Sbjct: 540 AGRVRFGGRLLGEVEEYFVETLVPGDTFVFAGEILRYEVLVEDEVYVSRTTATEPKVPAY 599

Query: 547 MGTKFATSTQLSHTILEMFRQPD-WPELPSATCEWLHLQRKVSKLPEADRMLMETFGHED 605
            G KF  ST L+  +  +   P+ W  LP    +WL LQ+  S+LP  D +L+ETF    
Sbjct: 600 AGGKFPLSTFLAAGVRALLSAPERWAALPPQVRDWLELQKAKSRLPGRDDLLVETFERSG 659

Query: 606 RQYLVCYGFAGRNAQQTLGLLLSQRMELAGLAPIGFVATDYATMLWGLEEVRDPAA---- 661
           R YLV Y F GR A QTLG+LL++R+E A L P+GFVA DYA  ++   ++    +    
Sbjct: 660 RYYLVTYPFEGRLAHQTLGMLLTRRLERARLKPLGFVANDYALAVYAAGDMGAAISDRRL 719

Query: 662 ----LVRPDGLRDSFEQWLSGNAVMKRTFRAAAIIAGLIDRNTPGRRKTGRQATFSSDIL 717
               L   D L D  E WL+ +A+MKRTFR  A+IAGLI+R  PG+ KT RQ T S+D++
Sbjct: 720 SLDDLFDQDMLGDDLEAWLAESALMKRTFRYCAVIAGLIERRFPGKEKTSRQVTVSTDLI 779

Query: 718 YDTLLKYDPDHVLMQITREEARRGLVDFGRIEELLARTTGRVDHRRLDRISPLAAPLLLE 777
           YD L +++PDH+L++  R +A  GL+D  R+ E+LAR  G V H+ L R+SPLA P+LLE
Sbjct: 780 YDVLRRHEPDHLLLRAARADAATGLLDVKRLGEMLARIRGHVVHQPLPRVSPLAVPVLLE 839

Query: 778 RGTVPVAGAAEDRLLAQAAEALMQEA 803
            G   V G A + LLA+A E L++ A
Sbjct: 840 IGRESVGGDANEALLAEAEEELVRAA 865