Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 286 a.a., transposase from Agrobacterium fabrum C58

 Score = 82.0 bits (201), Expect = 1e-20
 Identities = 77/270 (28%), Positives = 119/270 (44%), Gaps = 24/270 (8%)

Query: 16  CKALAVDRSSVRY-------RSVRPDDAEARAAMKAVAAERRRFGYRRI-HVMLERQGIM 67
           C+AL V RS              R D+       ++  +  R +G RR+ H +LE +G+ 
Sbjct: 19  CEALGVSRSGFHAWFNRSPSEHARHDEVLLERIKQSFQSSDRTYGARRVWHDVLE-EGLS 77

Query: 68  MNLKKLRRLYREEKLQVR-RRGGRKRALGTRWPMLVP---------DAPNQHWSLDFVSD 117
             L ++ RL R   L+ R RR G  +  G R P+++P         D PNQ W  DF   
Sbjct: 78  CGLHRIERLMRLNALRARPRRRGFPKDAGDR-PVVMPNVLDRQFVADRPNQKWVADFTYI 136

Query: 118 ALTDGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVV--SDNGT 175
              +G  + V AV+D +SR  +    + +++   V   L   + RRG+P  ++  SD G+
Sbjct: 137 WTAEGWLY-VAAVIDLFSRRVVGWSMNANMTAQLVTDALIMAIWRRGKPDALLHHSDQGS 195

Query: 176 ELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIR 235
           + TS          GI       G    N  +ESF    + E     ++ +  DAR  + 
Sbjct: 196 QYTSEQFQRLMGDHGITCSMSRSGNVWDNAAMESFFSSLKTERTARKVYRTRNDARADVF 255

Query: 236 AW-QHDYNHHRPHSGLGNIPPVEFVAKKGL 264
            + +  YN  R HS LG + P +F  K GL
Sbjct: 256 DYIERFYNPKRRHSTLGYLSPDDFETKVGL 285