Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

 Score =  304 bits (778), Expect = 2e-87
 Identities = 147/258 (56%), Positives = 185/258 (71%)

Query: 1   MAHVVEVHGVSQRRACKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVM 60
           + H+  V G+S+RRAC+ ++ DR  +RYRS RP + E R  ++ +A ERRRFGYRR+ ++
Sbjct: 11  VTHLKAVMGLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFIL 70

Query: 61  LERQGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALT 120
           L R G    + ++ RLYREE L VR+R  R+RA+GTR P+LV    N  WSLDFV D   
Sbjct: 71  LRRDGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFA 130

Query: 121 DGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSV 180
            GRRFRVL +VDD +RECLA + DTS+SG RV REL AL+ RRG+P ++VSDNGTELTS 
Sbjct: 131 CGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSN 190

Query: 181 AVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHD 240
           A+L+W +   ++WHYIAPG+PMQNG+VESFNGR RDELLNESLF  L  AR  I  W  D
Sbjct: 191 AILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEWADD 250

Query: 241 YNHHRPHSGLGNIPPVEF 258
           YNH RPHS LG   P  +
Sbjct: 251 YNHFRPHSSLGYQTPAAY 268