Pairwise Alignments

Query, 527 a.a., extracellular solute-binding protein family 5 (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  216 bits (550), Expect = 2e-60
 Identities = 160/522 (30%), Positives = 248/522 (47%), Gaps = 30/522 (5%)

Query: 1   MQKTTLLLATSALVLTPILASAETLRWARAGDSLTLDPHAQNEGPTHTLAHQIYEPLIIR 60
           M KT +LL TS + L      A+ L    +G   ++DPH  N  P + +A QI++ L  R
Sbjct: 1   MMKTGVLLLTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTER 60

Query: 61  DHFGQFQGALATEWAPKPDDPSVWVFKLREGVTFHDGSAFTAEDVVFSFERAKSETSA-- 118
              G+    LAT+W    +  + W F LR+GV +HDG  FT++DV+F+ +RA S  ++  
Sbjct: 61  TAEGRLVEGLATKWDTVSE--TKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPG 118

Query: 119 -MKELLTSISEVRAVDDMTVEFVTEGPNPILPNNFTNLFIMDKGWTEANGVTRVQDIANG 177
                + +I+ V A  D  V   T+ P P LP +  N+ I+ +    A       D  +G
Sbjct: 119 GFGGFMRNIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSR---HAGEGADTADYNSG 175

Query: 178 ETTFAATNAMGTGPYVLTSREPDVRTVLTINPDYWGADDFPLQVTEIIYTPIQNAATRVA 237
           +       A+GTG + LT+ +  +   L  NPD+WG     +      Y  I +A+ R  
Sbjct: 176 KA------AIGTGAFRLTTFKQGIEVGLERNPDWWGKK---VAWDHATYRMISSASARTT 226

Query: 238 ALLSGEVDFIQDVPVQDLERVAGTDGLEVQTAAQNRVIFLGMNSGADDLDSDNVEGA--- 294
           A L+G+VD I      D+ R   T  L   +    RVI+L  ++  D   +  V+G    
Sbjct: 227 AALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAF-VKGPKGE 285

Query: 295 ----NPLADARVRKAMNMAINRDAIKQVVMRGQSAPAGMIAPPFVNGWTAEMDGAAMTDI 350
               NPLAD RVR A++ AINR+ I   +M G +  +G   P     +T ++      D 
Sbjct: 286 ALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQ-PPKPDA 344

Query: 351 DAAKALMEEAGYGDGFSIQLDCPNDRYINDEAICQAVVGMLGQIGVTVNLDAKPKAQHFP 410
             AK L+ +AGY DGF + +  PNDRY N  A+ QAV  M  +IGV  N++A P      
Sbjct: 345 AGAKKLLADAGYPDGFQLTVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSS 404

Query: 411 LIQNGETNFYMLGWGVPTYDSEYVFNFLVHTREGDR--GSWNNTGFSNAEVDAKIVSLAS 468
             +  E    +LG G  TYD+  +   ++ T +  R  G+ N++G+SN  +D  +     
Sbjct: 405 --RKSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMM 462

Query: 469 ETDLAVRNQTIAEIWQVVQDEQLYLPIHHQVLNWGNTSAVGY 510
             D   R   + E  +V   +   +P++ Q   W     + Y
Sbjct: 463 IYDDKAREAALIEAVKVAITDGAIIPLYQQSNAWVLRKGLNY 504