Pairwise Alignments

Query, 541 a.a., AMP-dependent synthetase and ligase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 560 a.a., Medium-chain-fatty-acid--CoA ligase from Pseudomonas sp. S08-1

 Score =  253 bits (645), Expect = 2e-71
 Identities = 176/540 (32%), Positives = 273/540 (50%), Gaps = 28/540 (5%)

Query: 15  ANYVPLTPLSHLARAALVYPDREAVVYGARRFTYAEYHARVSRLASALAGAGIAPGDVVA 74
           AN  PL     L   +     RE V     R++YA ++ RV+RLA+ L+ AG+  GD VA
Sbjct: 13  ANQAPLLIKRLLLSGSRYEKTREIVYRDQLRYSYATFNERVARLANVLSDAGVKAGDTVA 72

Query: 75  TLLPNIPAMVEAHFGVPACGAVLNTINIRLDVDTVAYILSHGGAKAVLVDSQFLPLAAEA 134
            +  +    +E  F +P  GAVL+TINIRL  D + Y ++H   K VLV+S+F+PL    
Sbjct: 73  VMDWDSHRYLECMFAIPMIGAVLHTINIRLSADQILYTMNHAEDKFVLVNSEFVPLYKGI 132

Query: 135 CERLDGPAP--LLIEVADDAAGVHALGGYTEYEDFLAGGDPDFPWIMPRDEWESLALNYT 192
             +L       LL + A+  A +  L G  EYE+ LA   P + +    DE       YT
Sbjct: 133 ENQLTTVEKTILLTDGAEKTAELPNLVG--EYENLLAAASPKYDF-QDFDENSVATTFYT 189

Query: 193 SGTTGRPKGVVYHHRGAYLMTM------GTVISWRMV-LYPRWLAIVPLFHCNGWNHSWM 245
           +GTTG PKGV + HR   L T+      G+V S R++     ++ I P+FH + W   + 
Sbjct: 190 TGTTGNPKGVYFTHRQLVLHTLAEASVLGSVDSVRLLGTNDVYMPITPMFHVHAWGIPYA 249

Query: 246 MPMLGGTVVCCRDVSAQAIYTAIAENGVTHFGGAPIVLNMIVNAPDAARRPFSHTVEVFT 305
             MLG   V       + +     +  VT     P +L M++NA     + F    ++  
Sbjct: 250 ATMLGIKQVYPGRYDPELLVQLWRKEKVTFSHCVPTILQMVLNAKAGQGQDFGGW-KIII 308

Query: 306 AGAPPAAATLAAIEELGFNVTQVYGLTETYGHVTECVWNPDWDTLPQAERAAIKARQGVA 365
            G+    A   A +  G  +T  YG++ET   ++    N +     ++E+   + + GV 
Sbjct: 309 GGSALNRALYEAAKARGIQLTAAYGMSETCPLISCAHINEELKAGSESEQITYRIKAGVP 368

Query: 366 LPQMEHITVMDPEMRQVPMDGATTGEVMMRGNSVMKGYYRNPDATAEAFAGGYFHSGDIA 425
           +P +E   +M P+ + +P DG T GE+++R   +  GY+  P  +AE +  G+ H+GD+A
Sbjct: 369 VPLVE-TALMGPDGQLLPADGETQGELVLRAPWLTMGYFNEPQKSAELWEHGWLHTGDVA 427

Query: 426 LQHPDGYIQIADRAKDIIISGGENISSVEVEGALMHHPAVLLCAVVAKPDPTWGEVPCAF 485
                GYI I DR KD+I +GGE +SS+E+E  +  H AV   AVV  PDP WGE P A 
Sbjct: 428 TLDDLGYIDIRDRIKDVIKTGGEWLSSLELEDLISRHSAVREVAVVGVPDPQWGERPFAL 487

Query: 486 VELKDGKTAEEAEIIAFARERLAGF---------KTPKKV-VFTELPKTSTGKIQKFELR 535
           + L++G++ +   +    +E L  F           P ++ + T++PKTS GK+ K  +R
Sbjct: 488 LVLREGQSLDAKGL----KEHLKPFVEQGCINKWAIPSQIALVTDIPKTSVGKLDKKRIR 543