Pairwise Alignments

Query, 541 a.a., AMP-dependent synthetase and ligase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 555 a.a., Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  247 bits (631), Expect = 7e-70
 Identities = 174/543 (32%), Positives = 260/543 (47%), Gaps = 22/543 (4%)

Query: 9   GLDKCAANYVPLTPLSHLARAALVYPDREAVVY-----GARRFTYAEYHARVSRLASALA 63
           G      N   L   + +  AA  + D+E +VY     G  R+TYAE +ARV R A+AL 
Sbjct: 10  GCPSTTGNERQLNTTTLIRHAARTHGDQE-IVYRTPDGGWDRYTYAECYARVCRSANALR 68

Query: 64  GAGIAPGDVVATLLPNIPAMVEAHFGVPACGAVLNTINIRLDVDTVAYILSHGGAKAVLV 123
             G+ PGD V  L  N     E ++ +P  GAV+  +N+RL  + + Y++ H     V V
Sbjct: 69  ALGVEPGDRVGILDWNSRRHFELYWSIPGLGAVMLQMNLRLGAEDLGYVVGHSKVSYVCV 128

Query: 124 DSQFLPLA---AEACERLDGPAPLLIEVADDAAGVHALGGYTEYEDFLAGGDPDFPWIMP 180
           D   LP+A   A    ++ G   +  +  D       L     YED +A  D    W  P
Sbjct: 129 DESLLPIAESVAANSPQIKGWIVMTDKPLDQIKTT--LKPLLHYEDLMAAADTKIDW--P 184

Query: 181 R-DEWESLALNYTSGTTGRPKGVVYHHRGAYLMTMGTVISWRMVLYPRWLAIVPLFHCNG 239
             DE  + +  YT+GTTG+PKGV Y HRG YL +     +  M L    + I P+FH   
Sbjct: 185 EIDETSAYSACYTTGTTGKPKGVYYSHRGIYLHSTAMATNLGMTLDDCVMLITPMFHGQC 244

Query: 240 WNHSWMMPMLGGTVVCCRDVSAQ---AIYTAIAENGVTHFGGAPIVLNMIVNAPDA--AR 294
           W       +L   +V     +A+    +  A+   GVT   GAP +   ++   +    +
Sbjct: 245 WGLPQAATLLADKIVLPGRYAAEDTKPLVDAMIAEGVTITNGAPAIFQPMLQYIETMPVK 304

Query: 295 RPFSHTVEVFTAGAPPAAATLAAIEELGFNVTQVYGLTETYGHVTECVWNPDWDT-LPQA 353
             F     +  A  PP +  +   +  G  V   YG TE    VT     P     L Q 
Sbjct: 305 PDFGRMRMLSGASEPPLSMMIGFYDLTGAEVVHAYGATEATTLVTVNRLKPTLSKRLTQD 364

Query: 354 ERAAIKARQGVALPQMEHITVMDPEMRQVPMDGATTGEVMMRGNSVMKGYYRNPDATAEA 413
           ER  +K +QG+ L  ++ I +++   + +P DG + GE+ +RG  +   Y+  PD+    
Sbjct: 365 ERWNLKRKQGLVLTGVD-IRILNANDQDLPHDGQSAGEICLRGPWITTSYHDMPDSGDRF 423

Query: 414 FAGGYFHSGDIALQHPDGYIQIADRAKDIIISGGENISSVEVEGALMHHPAVLLCAVVAK 473
             GG++ SGD+     +GY+++ DR KD+I SGGE ISS+++E  LM H AV   AVV  
Sbjct: 424 LEGGWWRSGDVGTVDENGYLKVTDRIKDVIKSGGEWISSIDMENLLMGHSAVRDAAVVGI 483

Query: 474 PDPTWGEVPCAFVELKDGKTAEEAEIIAFARERLAGFKTPKKVVFTE-LPKTSTGKIQKF 532
           P   W E P A V LK G+ A + ++        A ++ P +V+F E +PKTS GK+ K 
Sbjct: 484 PHAKWQERPLALVVLKPGQQATQEQLQEHLTSAFAKWQLPDQVLFVEAIPKTSVGKLDKK 543

Query: 533 ELR 535
            +R
Sbjct: 544 RIR 546